NEW.md

In liukf10/DDPNA: Disease-Drived Differential Proteins Co-Expression Network Analysis

DDPNA Version 0.1.0

• The first version of DDPNA package.

DDPNA Version 0.1.1

• fix some small error
• add wgcnatest function

DDPNA Version 0.2.1

• fix ID_match function and allow user run it without blast+ software.
• in Sample_ID_data.rda file, add more data to use in example.
• add example in MaxquantDataconvert.Rd and ID_match.Rd
• add dataStatInf function which can summrize the statatic information of data.
• add DEP_Mod_HeatMap function which can get the DEP enrich fold in Module and plot a HeatMap
• add rename_dupnewID function which can rename the duplicated newID.
• add DEPsets function which get two or more IDsets interesection set and complementary set and give the colors.
• add DEP_Mod_net_plot function which remove hubs which not in the IDsets and replot the PFG network

DDPNA Version 0.2.2

• fix a bug in Data_impute function, previous function will error when doclust.
• fix a bug in dataStatInf function when ID have "-". 190716
• fix some bugs in Data_impute function. 190716
• fix the order of the module in Module_Enrich function. 191105
• allow switch x and y axis in DEP_Mod_HeatMap function. 191118

DDPNA Version 0.2.3

• fix the format of data "Sample_ID_data".200212

DDPNA Version 0.2.4

• fix some bugs in getmoduleHub and DEP_Mod_net_plot function.200327
• fix example in DEP_Mod_net_plot.Rd which use T/F instead of TRUE/FALSE. 200327

DDPNA Version 0.2.5

• fix bug in ID_match.20200602
• add correlation P value adjust in getmoduleHub function. 20200610
• fix a donntest error in IDmatch function. 20200626
• fix example error in MaxQdataconvert function. 20200626
• fix a problem of long system runtime in example of changedID and FCSenrichplot function. 20200626

DDPNA Version 0.2.6

• remove creat Plot Directories when output image.20200703

DDPNA Version 0.2.7

• change ftp website in ID_match.Rd and MaxQdataconvert.Rd. 20210422

DDPNA Version 0.2.8

• fix ID_match function occur error when contains metacharacters in GN. 20210528

DDPNA Version 0.3.0

• fix Data_impute function to save plot file in plot dir and add bicor method in outlier detect. 20210615,20210628,20210728

liukf10/DDPNA documentation built on Sept. 29, 2021, 1:35 a.m.