API for livnatje/DIALOGUE
DIALOGUE is a dimensionality reduction algorithm that uses cross-cell-type associations to identify multicellular programs and map the cell transcriptome as a function of its environment.
| Global functions | |
|---|---|
| DIALOGUE.identify.cell.types | Source code |
| DIALOGUE.pheno | Source code |
| DIALOGUE.pheno.multiclass | Source code |
| DIALOGUE.plot | Man page Source code |
| DIALOGUE.plot.av | Source code |
| DIALOGUE.plot.sig.comp | Source code |
| DIALOGUE.run | Man page Source code |
| DIALOGUE.upset | Source code |
| DIALOGUE.violin.pheno | Source code |
| DIALOGUE1 | Source code |
| DIALOGUE1.PMD | Source code |
| DIALOGUE1.PMD.empirical | Source code |
| DIALOGUE1.PMD.pairwise | Source code |
| DIALOGUE2 | Source code |
| DIALOGUE2.mixed.effects | Source code |
| DIALOGUE2.pair | Source code |
| DIALOGUE3 | Source code |
| DIALOGUE_SeuratExample | Man page Source code |
| DIALOGUE_example.initialize | Source code |
| DIALOGUE_make.cell.type.seurat | Man page Source code |
| DLG.add.metadata | Source code |
| DLG.cor.plot | Source code |
| DLG.find.scoring | Source code |
| DLG.fix.sig.names | Source code |
| DLG.get.OE | Source code |
| DLG.get.param | Man page Source code |
| DLG.hlm.pval | Source code |
| DLG.initialize | Source code |
| DLG.iterative.nnls | Source code |
| DLG.multi.get.gene.pval | Source code |
| DLG.plot1 | Source code |
| add.n.of.samples | Man page Source code |
| apply.anova | Source code |
| apply.formula.HLM | Source code |
| apply.formula.all.HLM | Source code |
| average.mat.rows | Source code |
| call.plot | Man page Source code |
| call.plot.multilabels | Man page Source code |
| call.plot.plus | Man page Source code |
| cap.mat | Man page Source code |
| cell.type | Man page |
| cell.type-class | Man page |
| cell.type.2.list | Source code |
| center.large.matrix | Source code |
| center.matrix | Man page Source code |
| colMedians | Source code |
| cor.plot | Source code |
| fisher.combine | Source code |
| formula.HLM | Source code |
| generic.vector2mat | Source code |
| get.abundant | Source code Source code |
| get.cor.zscores | Source code |
| get.fisher.p.value | Source code |
| get.mat | Source code Source code |
| get.onesided.p.value | Source code |
| get.p.zscores | Source code Source code |
| get.pval.from.zscores | Source code |
| get.residuals | Source code |
| get.strsplit | Man page Source code |
| get.top.cor | Source code |
| intersect.list1 | Source code |
| labels.2.colors | Source code |
| list.2.ids | Source code |
| make.cell.type | Man page Source code |
| multiplot | Source code |
| multiplot.util | Source code |
| my.format.pval | Source code |
| my.gsub | Source code |
| my.match | Source code |
| p.adjust.mat | Source code |
| p.adjust.mat.per.label | Source code |
| pcor.mat | Source code |
| ranksum.test | Source code |
| ranksum.test.mat | Source code |
| sample.per.label | Source code |
| set.cell.type | Source code |
| setdiff.lists.by.idx | Source code |
| sig2MCP | Source code |
| spearman.cor | Source code |
| t.test.groups | Source code |
| t.test.mat | Source code |
| violin.split | Source code |
