cell.type-class: DIALOGUE cell.type S4 class

In livnatje/DIALOGUE: DIALOGUE is a dimensionality reduction algorithm that uses cross-cell-type associations to identify multicellular programs and map the cell transcriptome as a function of its environment.

DIALOGUE cell.type S4 class

Description

An S4 class that represents a subset of cells (for example, a particular cell type).

Slots

name

cell type name;

cells

cell identifiers (n x 1);

tpm

gene expression matrix (m x n)

genes

genes (m x 1) represented in the [tpm] matrix;

X

features matrix (n x k), where n is the number of cells and k is the number of features, e.g., PCs, NMF components, tpm etc.

samples

the samples corresponding to the cells in [cells] (n x 1)

Author(s)

Livnat Jerby-Arnon

See Also

See DIALOGUE GitHub page for more details. DIALOGUE.plot

livnatje/DIALOGUE documentation built on Jan. 30, 2024, 1:31 a.m.