prediction_wbcc: prediction_wbcc

Description Usage Arguments Details Value Author(s)

Description

Predict cell type composition of a whole blood sample based on a given trained model.

Usage

1
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prediction_wbcc(predictor, data, covariates, transformation = function(x)
  x, ncomp = NULL, impute = TRUE, ...)

Arguments

predictor

trained model

data

matrix of beta values

covariates

matrix of covariates

transformation

depends on the model (e.g. (10^x)-1 if model is log10(cellPercentages+1)). Default is no transformation.

ncomp

optimal number of components

impute

TRUE

...

extra options for predict()

Details

Predict cell percentages

Value

predicted cell percentages

Author(s)

miterson


ljsinke/wbccPredictor documentation built on May 15, 2019, 12:07 a.m.