Files in lkmklsmn/MitoTrace
A computational framework for investigating mitochondrial heteroplasmies in RNA sequencing data
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
Data/.DS_Store
Data/DarmanisEtAl/annotation_file/FromGeoSpreadsheet.tsv
Data/DarmanisEtAl/annotation_file/GBM_SRA_plate_relation
Data/DarmanisEtAl/annotation_file/GBM_TSNE.csv
Data/DarmanisEtAl/annotation_file/GBM_metadata.csv
Data/DarmanisEtAl/annotation_file/SRR_Patient_all_list_sorted
Data/GRCH38_MT.fa
Data/GRCH38_MT.fa.fai
Data/LeifEtAl/annotation_file/SRR_donors_list
Data/LeifEtAl/annotation_file/target_cell.csv
Data/LeifEtAl/annotation_file/target_mutation.csv
Data/McGinnisEtAl/annotation_file/jurkat_293t_demuxlet.best
Data/mouse_MT.fasta
MitoTrace.Rproj
R/MitoTrace.R
README.md
examples/Reproduce results in figures 5H & 5I from Leif et al.html
examples/Reproduce results in figures 5H & 5I from Leif et al_files/MathJax.js
examples/Reproduce_Cell_Leif_et_al.Rmd
examples/Reproduce_Cell_Leif_et_al.html
examples/Single Cell SMART-SEQ2 data.Rmd
examples/Single-Cell-10X-Genomics-data.Rmd
examples/Single-Cell-10X-Genomics-data.html
examples/Single-Cell-SMART-SEQ2-data.html
examples/rsconnect/documents/Reproduce_Cell_Leif_et_al.Rmd/rpubs.com/rpubs/Document.dcf
images/Fig0_Reproduce_result.png
images/Fig2_Smart-seq2.png
images/Fig4_10x_genomics.png
images/MitoTrace.png
images/R1.png
images/barplot.png
images/gene_bar_cov.png
images/somatic.png
man/checkSequenceNames.Rd
