Man pages for lldelisle/analysePeaks
Compare, annotate your peaks
| annotatePreCalculatedGRs | Create a GRList with a reference GR and a sample GR annotated... |
| annotateWithCate | Add annotations to the list to be able to plot categories |
| barplotFromNamedVector | Plot a barplot from a named vector |
| cateNamesFromThreshold | Give category names from thresholds |
| createMyGRs | Create a GRList with a reference GR and a sample GR annotated... |
| createMyGRsUsingSimpleOverlap | Create a GRList with a reference GR and a sample GR annotated... |
| plotAllBarPlotForCategoriesFromMyGR | Plot barplot for categories of a specific feature for a Set... |
| plotAllPheatmapsFor2CategoriesFromMyGR | Plot pheatmaps for categories of 2 specific features for a... |
| plotCateComparisonSetAndRef | Plot barplots and pheatmaps for the scores or the distance of... |
| plotClassicalHistogramForMyGRs | Plot histograms for the scores or the distance of features in... |
| plotPairwiseComparison | Plot different plots to illustrate a comparison between 2... |
| writeNarrowPeaksFromMyGRsAndAnnot | Extract common and specific peaks in narrowPeak format |
| writeTablesFromMyGRsAndAnnot | Export myGRs with all annotations in tab-delimited text... |
