writeTablesFromMyGRsAndAnnot: Export myGRs with all annotations in tab-delimited text...

In lldelisle/analysePeaks: Compare, annotate your peaks

Description

Export myGRs with all annotations in tab-delimited text files.

Usage

writeTablesFromMyGRsAndAnnot(
  myGRAndAttributes,
  outputDirectory,
  useOriginalNarrowPeak = F
)

Arguments

myGRAndAttributes	Should be the output of createMyGRs or createMyGRsUsingSimpleOverlap
outputDirectory	a path to a folder where will be written the text files.
useOriginalNarrowPeak	logical to specify if instead of the coordinates in myGRAndAttributes which are by default the summit +/-150bp. You want the original coordinates as in the input (default is F).

Details

The coordinates are 1-based closed.

Value

Does not return anything but write 2 files into the 'outputDirectory': Ref_table.txt Set_table.txt

lldelisle/analysePeaks documentation built on July 10, 2021, 1:02 p.m.