parentChild-class: Classes "parentChild" and "pC"

In llrs/topGO: Enrichment Analysis for Gene Ontology

Description

Classes that extend the "classicCount" class by adding support for the parent-child test.

Objects from the Class

Objects can be created by calls of the form new("parentChild", testStatistic, name, groupMembers, parents, sigMembers, joinFun, ...).

Slots

splitIndex:

Object of class "integer" ~~

joinFun:

Object of class "character" ~~

significant:

Object of class "integer" ~~

name:

Object of class "character" ~~

allMembers:

Object of class "character" ~~

members:

Object of class "character" ~~

testStatistic:

Object of class "function" ~~

testStatPar:

Object of class "list" ~~

Extends

Class "classicCount", directly. Class "groupStats", by class "classicCount", distance 2.

Methods

allMembers<-

signature(object = "parentChild"): ...

allMembers

signature(object = "parentChild"): ...

allParents

signature(object = "parentChild"): ...

getSigGroups

signature(object = "topGOdata", test.stat = "parentChild"): ...

initialize

signature(.Object = "parentChild"): ...

joinFun

signature(object = "parentChild"): ...

numAllMembers

signature(object = "parentChild"): ...

numSigAll

signature(object = "parentChild"): ...

sigAllMembers

signature(object = "parentChild"): ...

sigMembers<-

signature(object = "parentChild"): ...

updateGroup

signature(object = "parentChild", name = "missing", members = "character"): ...

Author(s)

Adrian Alexa

See Also

classicCount-class, groupStats-class, getSigGroups-methods

Examples

showClass("parentChild")
showClass("pC")

llrs/topGO documentation built on May 22, 2019, 12:16 p.m.