load.ANI: Load dataframe or matrix, and store it as a bactaxRObject...

In lmc297/bactaxR: Bacterial taxonomy construction and evaluation in R

Load dataframe or matrix, and store it as a bactaxRObject object

Description

This function takes a matrix or data frame already stored in memory, and converts it to a bactaxR object. The matrix or data frame should contain at least 3 columns, where Column 1 contains a query genome, Column 2 contains a reference genome, and Column 3 contains ANI values (ranging from 0 to 100) This matrix or data frame must contain pairwise comparisons for all query and reference genomes (i.e., all-vs-all comparisons).

Usage

load.ANI(x)

Arguments

x	Matrix or data frame, where Columns 1, 2, and 3 contain the query genome, reference genome, and associated ANI values, respectively (remaining columns will be ignored).

Value

A bactaxRObject

lmc297/bactaxR documentation built on Feb. 6, 2024, 7:41 p.m.