Files in lmterryn/ITSMe
Individual Tree Structural Metrics
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.gitignore
CITATION.cff
DESCRIPTION
ITSMe.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/basic_metrics_pc.R
R/basic_metrics_qsm.R
R/metrics_Terryn_2020.R
R/plotting_metrics_pc.R
R/read_rct_qsm.R
R/read_tree_pc.R
R/read_tree_qsm.R
R/summary_metrics.R
R/tapering_metrics.R
README.Rmd
README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/_config.yml
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/ITSMe.html
docs/articles/index.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/branch_angle_ratio_qsm.html
docs/reference/calc_r.html
docs/reference/classify_crown_pc.html
docs/reference/crown_diameterheight_ratio_qsm.html
docs/reference/crown_evenness_qsm.html
docs/reference/crown_height_qsm.html
docs/reference/crown_start_height_qsm.html
docs/reference/crownset_qsm.html
docs/reference/cylinder_length_volume_ratio_qsm.html
docs/reference/dab_pc.html
docs/reference/dbh.html
docs/reference/dbh_height_ratio_qsm.html
docs/reference/dbh_minradius_ratio_qsm.html
docs/reference/dbh_pc.html
docs/reference/dbh_qsm.html
docs/reference/dbh_volume_ratio_qsm.html
docs/reference/f.html
docs/reference/figures/crown_example.jpeg
docs/reference/figures/crown_example_tropical.jpeg
docs/reference/figures/cv_example.JPG
docs/reference/figures/dab_example.jpeg
docs/reference/figures/dbh_example.jpeg
docs/reference/figures/dbh_example_buttress.jpeg
docs/reference/figures/logo.png
docs/reference/figures/pca_example.jpeg
docs/reference/figures/summary.jpeg
docs/reference/index.html
docs/reference/normalize_pc.html
docs/reference/plot_crown_classification_pcs.html
docs/reference/plot_cv_pcs.html
docs/reference/plot_dab_fit_pcs.html
docs/reference/plot_dbh_fit_pcs.html
docs/reference/plot_pca_pcs.html
docs/reference/projected_crown_area_pc.html
docs/reference/read_tree_pc.html
docs/reference/read_tree_qsm.html
docs/reference/relative_volume_ratio_qsm.html
docs/reference/shedding_ratio_qsm.html
docs/reference/stem_branch_angle_qsm.html
docs/reference/stem_branch_cluster_size_qsm.html
docs/reference/stem_branch_distance_qsm.html
docs/reference/stem_branch_length_qsm.html
docs/reference/stem_branch_radius_qsm.html
docs/reference/summary_Terryn_2020.html
docs/reference/summary_basic_pointcloud_metrics.html
docs/reference/total_branch_length_qsm.html
docs/reference/total_branch_volume_qsm.html
docs/reference/total_cyl_length_qsm.html
docs/reference/tree_height.html
docs/reference/tree_height_pc.html
docs/reference/tree_height_qsm.html
docs/reference/tree_position_pc.html
docs/reference/tree_position_qsm.html
docs/reference/tree_volume_qsm.html
docs/reference/trunk_volume_qsm.html
docs/reference/vertical_bin_radii_qsm.html
docs/reference/volume_below_55_qsm.html
docs/reference/volume_crown_pc.html
docs/search.json
docs/sitemap.xml
man/DBH_qsm.Rd
man/alpha_volume_pc.Rd
man/branch_angle_ratio_qsm.Rd
man/calc_r.Rd
man/classify_crown_pc.Rd
man/crown_area_alpha_qsm.Rd
man/crown_diameterheight_ratio_qsm.Rd
man/crown_evenness_qsm.Rd
man/crown_height_qsm.Rd
man/crown_start_height_qsm.Rd
man/crownset_qsm.Rd
man/cylinder_length_volume_ratio_qsm.Rd
man/dab_pc.Rd
man/dbh.Rd
man/dbh_height_ratio_qsm.Rd
man/dbh_minradius_ratio_qsm.Rd
man/dbh_pc.Rd
man/dbh_volume_ratio_qsm.Rd
man/diameter_slice_pc.Rd
man/extract_lower_trunk_pc.Rd
man/f.Rd
man/figures/ITSMe_logo_RGB.jpg
man/figures/crown_example.jpeg
man/figures/crown_example_tropical.jpeg
man/figures/cv_example.jpeg
man/figures/dab_example.jpeg
man/figures/dbh_example.jpeg
man/figures/dbh_example_buttress.jpeg
man/figures/diameter_slice_example.jpeg
man/figures/diameter_slice_example_butt.jpeg
man/figures/logo.png
man/figures/pca_example.jpeg
man/figures/summary.jpeg
man/figures/tree_height_tls_example.jpeg
man/figures/tree_height_uavls_example.jpeg
man/lm_eqn.Rd
man/normalize_pc.Rd
man/plot_av_pcs.Rd
man/plot_circle_fit_pcs.Rd
man/plot_crown_classification_pcs.Rd
man/plot_dab_fit_pcs.Rd
man/plot_dbh_fit_pcs.Rd
man/plot_pa_pcs.Rd
man/plot_tree_height_pcs.Rd
man/projected_area_pc.Rd
man/read_rct_qsm.Rd
man/read_tree_pc.Rd
man/read_tree_qsm.Rd
man/relative_volume_ratio_qsm.Rd
man/shedding_ratio_qsm.Rd
man/stem_branch_angle_qsm.Rd
man/stem_branch_cluster_size_qsm.Rd
man/stem_branch_distance_qsm.Rd
man/stem_branch_length_qsm.Rd
man/stem_branch_radius_qsm.Rd
man/stem_tapering_pc.Rd
man/summary_basic_pointcloud_metrics.Rd
man/summary_qsm_metrics.Rd
man/total_branch_length_qsm.Rd
man/total_branch_volume_qsm.Rd
man/total_cyl_length_qsm.Rd
man/tree_height.Rd
man/tree_height_pc.Rd
man/tree_height_qsm.Rd
man/tree_position_pc.Rd
man/tree_position_qsm.Rd
man/tree_volume_qsm.Rd
man/trunk_height_qsm.Rd
man/trunk_volume_qsm.Rd
man/vertical_bin_radii_qsm.Rd
man/volume_below_55_qsm.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/buttressed_trees/buttressed_tree_1_pc.txt
tests/buttressed_trees/buttressed_tree_1_qsm_1.mat
tests/buttressed_trees/buttressed_tree_1_qsm_2.mat
tests/buttressed_trees/buttressed_tree_1_qsm_3.mat
tests/buttressed_trees/buttressed_tree_2_pc.txt
tests/buttressed_trees/buttressed_tree_2_qsm_1.mat
tests/buttressed_trees/buttressed_tree_2_qsm_2.mat
tests/buttressed_trees/buttressed_tree_2_qsm_3.mat
tests/non_buttressed_trees/multiple_qsm/tree_1_qsm.mat
tests/non_buttressed_trees/multiple_qsm/tree_2_qsm.mat
tests/non_buttressed_trees/single_qsm/tree_1_qsm.mat
tests/non_buttressed_trees/single_qsm/tree_2_qsm.mat
tests/non_buttressed_trees/tree_1_pc.txt
tests/non_buttressed_trees/tree_2_pc.txt
tests/output/circle_tree_1_pc_1.3_0.06_.jpeg
tests/output/circle_tree_2_pc_1.3_0.06_.jpeg
tests/output/crown_tree_1_pc_1.5_1.jpeg
tests/output/crown_tree_2_pc_1.5_1.jpeg
tests/output/cv_tree_1_pc_1.png
tests/output/cv_tree_2_pc_1.png
tests/output/dab_buttressed_tree_1_pc_0.001_7.jpeg
tests/output/dab_buttressed_tree_2_pc_0.001_7.jpeg
tests/output/dbh_tree_1_pc_0.001_0.06.jpeg
tests/output/dbh_tree_2_pc_0.001_0.06.jpeg
tests/output/pa_tree_1_pc_2.jpeg
tests/output/pa_tree_2_pc_2.jpeg
tests/output/pca_tree_1_pc_2.jpeg
tests/output/pca_tree_2_pc_2.jpeg
tests/output/summary.csv
tests/output/summary_means.csv
tests/output/summary_sds.csv
tests/output/tree_height_tree_1_pc.jpeg
tests/output/tree_height_tree_2_pc.jpeg
tests/point_clouds/dtm.txt
tests/point_clouds/pc_tree.las
tests/point_clouds/pc_tree.ply
tests/point_clouds/pc_tree.txt
tests/point_clouds/pc_tree_buttress.txt
tests/point_clouds/pc_tree_temp.ply
tests/point_clouds/pc_tree_uav.txt
tests/qsms/qsm_tree_v200.mat
tests/qsms/qsm_tree_v230.mat
tests/qsms/qsm_tree_v230_notria.mat
tests/qsms/qsm_tree_v240.mat
tests/qsms/qsm_tree_v240_notria.mat
tests/qsms/qsm_trunk.mat
tests/qsms/qsms_tree_v230.mat
tests/qsms/qsms_tree_v230_notria.mat
tests/qsms/qsms_tree_v240.mat
tests/qsms/qsms_tree_v240_notria.mat
tests/testthat.R
tests/testthat/Rplots-UG-8YMB2T3.pdf
tests/testthat/Rplots.pdf
tests/testthat/av_tree_1_pc_1.png
tests/testthat/av_tree_2_pc_1.png
tests/testthat/test-basic_metrics_pc.R
tests/testthat/test-basic_metrics_qsm.R
tests/testthat/test-metrics_Terryn_2020.R
tests/testthat/test-plotting_metrics_pc.R
tests/testthat/test-read_tree_pc.R
tests/testthat/test-read_tree_qsm.R
tests/testthat/test-summary_metrics.R
vignettes/.gitignore
vignettes/ITSMe.Rmd
