lmweber/ggspavis: Visualization functions for spatial transcriptomics data

Visualization functions for spatial transcriptomics data. Includes functions to generate several types of plots, including spot plots, feature (molecule) plots, reduced dimension plots, spot-level quality control (QC) plots, and feature-level QC plots, for datasets from the 10x Genomics Visium and other technological platforms. Datasets are assumed to be in either SpatialExperiment or SingleCellExperiment format.

Getting started

Package details

Bioconductor views DimensionReduction GeneExpression QualityControl SingleCell Spatial Transcriptomics
LicenseMIT + file LICENSE
URL https://github.com/lmweber/ggspavis
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lmweber/ggspavis documentation built on April 4, 2024, 3:21 a.m.