lockEF/BayesianScreening: Perform Bayesian Screening with Gene Dependence

Includes functions to compute posteriors from a gene-level hierarchical prior, as described in the manuscript "Bayesian genome- and epigenome-wide association studies with gene level dependence." Also includes functions to perform two-class testing with shared kernels for methylation array data. The file BinaryExample.r gives example code for simulated categorical data. The file GliomaMethylExample.r gives example code for an application to methylation screening data.

Getting started

Package details

AuthorEric F. Lock
MaintainerEric F. Lock <elock@umn.edu>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lockEF/BayesianScreening documentation built on May 24, 2020, 11:50 p.m.