Files in lolmid/unbiased_intractable_targets

Debiased particle MCMC with couplings

.Rbuildignore

.gitignore

.swo

.swp

.tmp.swp

DESCRIPTION

NAMESPACE

R/RcppExports.R R/debiasedpmcmc-package.R R/debiasing_algorithm.R R/gaussian_couplings.R R/ghk.R R/histogram_c_chains.R R/mh_kernel.R R/model_get_ar_CPF.R R/model_get_pz_CPF.R R/model_iid_cpm.R R/model_ising.R R/model_levy_sv.R R/model_lgssm.R R/model_lgssm2params.R R/model_mv_probit.R R/model_pz.R R/model_re.R R/pf.R R/resampling-multinomial.R R/resampling-systematic.R R/util_pz_transition.R R/utils.R

debiasedpmcmc.Rproj

inst/reproduce/Section 2.4 tails of meeting times/pseudomarginalmeetings.R

inst/reproduce/Section 3.1 lgssm/README.txt

inst/reproduce/Section 3.1 lgssm/data/lgssm_2params_100obs.RData

inst/reproduce/Section 3.1 lgssm/exp_settings.R inst/reproduce/Section 3.1 lgssm/gen_data.R inst/reproduce/Section 3.1 lgssm/lg_ssm_different_N.R inst/reproduce/Section 3.1 lgssm/lg_ssm_different_N_Hkm.R inst/reproduce/Section 3.1 lgssm/lg_ssm_different_N_Hkm_process_results.R inst/reproduce/Section 3.1 lgssm/lg_ssm_different_N_serial.R inst/reproduce/Section 3.1 lgssm/lg_ssm_scalingT.R

inst/reproduce/Section 3.2 neuroscience/README.txt

inst/reproduce/Section 3.2 neuroscience/binomialmodel.R inst/reproduce/Section 3.2 neuroscience/binomialmodel.bpf.R inst/reproduce/Section 3.2 neuroscience/comparecost.bpfvscsmc.R inst/reproduce/Section 3.2 neuroscience/csmc.2dgrid.R inst/reproduce/Section 3.2 neuroscience/load.odyssey.R inst/reproduce/Section 3.2 neuroscience/plot.datalikelihood.R inst/reproduce/Section 3.2 neuroscience/plot.efficiency.R inst/reproduce/Section 3.2 neuroscience/plot.meetingtimes.R inst/reproduce/Section 3.2 neuroscience/plot.traces.R inst/reproduce/Section 3.2 neuroscience/pmmh.bpf.binomial.R inst/reproduce/Section 3.2 neuroscience/pmmh.csmc.binomial.R inst/reproduce/Section 3.2 neuroscience/pmmh.csmc.binomial.originalsd.R inst/reproduce/Section 3.2 neuroscience/run.odyssey.R

inst/reproduce/Section 3.2 neuroscience/run.odyssey.binomial.sh

inst/reproduce/Section 3.2 neuroscience/run.odyssey.bpf.R

inst/reproduce/Section 3.2 neuroscience/thaldata.csv

inst/reproduce/Section 4.1 blockpm/README.txt

inst/reproduce/Section 4.1 blockpm/data/cov_data.RData

inst/reproduce/Section 4.1 blockpm/data/tmp

inst/reproduce/Section 4.1 blockpm/elect_data.RData

inst/reproduce/Section 4.1 blockpm/election_vote_Hkm_estimators.R inst/reproduce/Section 4.1 blockpm/election_vote_compare_meeting_times.R inst/reproduce/Section 4.1 blockpm/election_vote_compare_serial.R inst/reproduce/Section 4.1 blockpm/exp_settings.R inst/reproduce/Section 4.1 blockpm/figs/mt.pdf inst/reproduce/Section 4.1 blockpm/figs/mt_cw.pdf

inst/reproduce/Section 4.1 blockpm/test_data.RData

inst/reproduce/Section 4.2 coupledexchange/README.txt

inst/reproduce/Section 4.2 coupledexchange/data/ising_coupled.RData

inst/reproduce/Section 4.2 coupledexchange/data/ising_coupled_noext.RData

inst/reproduce/Section 4.2 coupledexchange/data/ising_data.RData

inst/reproduce/Section 4.2 coupledexchange/data/ising_data_noext.RData

inst/reproduce/Section 4.2 coupledexchange/data/ising_serial.RData

inst/reproduce/Section 4.2 coupledexchange/data/ising_serial_noext.RData

inst/reproduce/Section 4.2 coupledexchange/exp_settings.R inst/reproduce/Section 4.2 coupledexchange/ising.R inst/reproduce/Section 4.2 coupledexchange/ising_gendata.R inst/reproduce/Section 4.2 coupledexchange/ising_process_results.R inst/reproduce/Section 4.2 coupledexchange/ising_serial.R man/CPF.Rd man/CPF_coupled.Rd man/H_bar.Rd man/acc_rate.Rd man/continue_coupled_chains.Rd man/coupled_cpm_chains.Rd man/coupled_cpm_chains_Tblocking.Rd man/coupled_mcmc_chains.Rd man/coupled_pm_chains.Rd man/coupled_pmmh_chains.Rd man/debiasedpmcmc-package.Rd man/expit.Rd man/fast_dmvnorm.Rd man/fast_dmvnorm_chol_inverse.Rd man/fast_rmvnorm.Rd man/fast_rmvnorm_chol.Rd man/gaussian_max_coupling.Rd man/gaussian_max_coupling_cholesky_R.Rd man/get_ar.Rd man/get_cpm_T_blocking.Rd man/get_cpm_kernel.Rd man/get_exchange_kernel.Rd man/get_iid_cpm.Rd man/get_ising.Rd man/get_lgssm.Rd man/get_lgssm_2params.Rd man/get_mh_kernel.Rd man/get_mv_probit_model.Rd man/get_pm_kernel.Rd man/get_pmmh_kernel.Rd man/get_pmmh_kernel_component_update.Rd man/get_pz.Rd man/get_pz_naturalparams.Rd man/get_re_model.Rd man/ghk_obs_vectorise.Rd man/histogram_c_chains.Rd man/kf.Rd man/kf_1d.Rd man/logit.Rd man/pf.Rd man/plot_histogram.Rd man/pz_params2transformed.Rd man/pz_transformed2params.Rd man/pz_transition.Rd man/rnorm_max_coupling.Rd man/setmytheme.Rd man/vec_gauss_max_coupling_mat.Rd man/vec_gaussian_max_coupling.Rd

src/Makevars

src/RcppExports.cpp

src/SVLevy_functions.cpp

src/coupling.cpp

src/estimator_bin.cpp

src/multinomial.cpp

src/multinomial.h

src/mvnorm.cpp

src/mvnorm.h

src/pz_functions.cpp

src/systematic.cpp

src/systematic.h

src/tree.cpp

src/tree.h

lolmid/unbiased_intractable_targets documentation built on May 13, 2019, 11:54 p.m.