.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllGenerics.R
R/barplot.R
R/boxplot.R
R/bubbleplot.R
R/dimred_comparison_page.R
R/dimred_feature_page.R
R/dimred_sample_page.R
R/feature_expression_page.R
R/feature_grid_page.R
R/feature_selection_page.R
R/heatmap.R
R/reexports.R
R/scatterplot.R
R/summarize.R
R/text_output.R
R/violinplot.R
R/visualization_functions.R
README.md
docs/404.html
docs/LICENSE-text.html
docs/articles/Developer_guide.html
docs/articles/Developer_guide_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Developer_guide_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Developer_guide_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Developer_guide_files/font-awesome-5.1.0/css/all.css
docs/articles/Developer_guide_files/font-awesome-5.1.0/css/v4-shims.css
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-brands-400.eot
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-brands-400.svg
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-brands-400.ttf
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff2
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-regular-400.eot
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-regular-400.svg
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-regular-400.ttf
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff2
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-solid-900.eot
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-solid-900.svg
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-solid-900.ttf
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff
docs/articles/Developer_guide_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff2
docs/articles/Developer_guide_files/header-attrs-2.5/header-attrs.js
docs/articles/Documentation.html
docs/articles/Documentation_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Documentation_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Documentation_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Documentation_files/font-awesome-5.1.0/css/all.css
docs/articles/Documentation_files/font-awesome-5.1.0/css/v4-shims.css
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-brands-400.eot
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-brands-400.svg
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-brands-400.ttf
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff2
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-regular-400.eot
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-regular-400.svg
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-regular-400.ttf
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff2
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-solid-900.eot
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-solid-900.svg
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-solid-900.ttf
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff
docs/articles/Documentation_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff2
docs/articles/Documentation_files/header-attrs-2.5/header-attrs.js
docs/articles/Quality_metrics.html
docs/articles/Quality_metrics_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Quality_metrics_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Quality_metrics_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Quality_metrics_files/font-awesome-5.1.0/css/all.css
docs/articles/Quality_metrics_files/font-awesome-5.1.0/css/v4-shims.css
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-brands-400.eot
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-brands-400.svg
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-brands-400.ttf
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff2
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-regular-400.eot
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-regular-400.svg
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-regular-400.ttf
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff2
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-solid-900.eot
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-solid-900.svg
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-solid-900.ttf
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff
docs/articles/Quality_metrics_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff2
docs/articles/Quality_metrics_files/header-attrs-2.5/header-attrs.js
docs/articles/images/developer_guide/plotly_linking_static.PNG
docs/articles/images/documentation/barplot_page.PNG
docs/articles/images/documentation/boxplot_page.PNG
docs/articles/images/documentation/cell_metadata1.PNG
docs/articles/images/documentation/cell_metadata2.PNG
docs/articles/images/documentation/colormaps.PNG
docs/articles/images/documentation/dimred_comp1.PNG
docs/articles/images/documentation/dimred_comp2.PNG
docs/articles/images/documentation/dimred_feature.PNG
docs/articles/images/documentation/feature_expression.PNG
docs/articles/images/documentation/feature_grid_page.PNG
docs/articles/images/documentation/feature_selection.PNG
docs/articles/images/documentation/heatmap_page.PNG
docs/articles/images/documentation/heatmap_settings.PNG
docs/articles/images/documentation/scatterplot_feat.PNG
docs/articles/images/documentation/scatterplot_label.PNG
docs/articles/images/documentation/scatterplot_meta.PNG
docs/articles/images/documentation/scatterplot_page.PNG
docs/articles/images/documentation/scatterplot_settings.PNG
docs/articles/images/documentation/violinplot_page.PNG
docs/articles/images/use_case_1/cell_filtering.PNG
docs/articles/images/use_case_1/feature_filtering.PNG
docs/articles/images/use_case_1/knee_plot.PNG
docs/articles/images/use_case_1/metadata_violin.PNG
docs/articles/images/use_case_1/summary.PNG
docs/articles/images/use_case_2/cell_metadata1.PNG
docs/articles/images/use_case_2/cell_metadata2.PNG
docs/articles/images/use_case_2/feature_explorer.PNG
docs/articles/images/use_case_2/feature_grid.PNG
docs/articles/images/use_case_2/heatmap.PNG
docs/articles/images/use_case_2/scatterplot.PNG
docs/articles/images/use_case_3/dimred_comp1.PNG
docs/articles/images/use_case_3/dimred_comp2.PNG
docs/articles/images/use_case_3/feature_selection.PNG
docs/articles/index.html
docs/articles/sc_data_explorer.html
docs/articles/sc_data_explorer_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/sc_data_explorer_files/anchor-sections-1.0/anchor-sections.css
docs/articles/sc_data_explorer_files/anchor-sections-1.0/anchor-sections.js
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/css/all.css
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/css/v4-shims.css
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-brands-400.eot
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-brands-400.svg
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-brands-400.ttf
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff2
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-regular-400.eot
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-regular-400.svg
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-regular-400.ttf
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff2
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-solid-900.eot
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-solid-900.svg
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-solid-900.ttf
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff
docs/articles/sc_data_explorer_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff2
docs/articles/sc_data_explorer_files/header-attrs-2.5/header-attrs.js
docs/articles/vis_parameter_selection.html
docs/articles/vis_parameter_selection_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/vis_parameter_selection_files/anchor-sections-1.0/anchor-sections.css
docs/articles/vis_parameter_selection_files/anchor-sections-1.0/anchor-sections.js
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/css/all.css
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/css/v4-shims.css
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-brands-400.eot
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-brands-400.svg
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-brands-400.ttf
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-brands-400.woff2
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-regular-400.eot
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-regular-400.svg
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-regular-400.ttf
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-regular-400.woff2
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-solid-900.eot
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-solid-900.svg
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-solid-900.ttf
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff
docs/articles/vis_parameter_selection_files/font-awesome-5.1.0/webfonts/fa-solid-900.woff2
docs/articles/vis_parameter_selection_files/header-attrs-2.5/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ComplexHeatmap_heatmap.html
docs/reference/barplot.html
docs/reference/boxplot.html
docs/reference/bubbleplot.html
docs/reference/correct_name.html
docs/reference/df_per_func.html
docs/reference/df_without_grouping.html
docs/reference/dimred-comparison-page.html
docs/reference/dimred-feature-page.html
docs/reference/dimred-sample-page.html
docs/reference/feature-expression-page.html
docs/reference/feature-grid-page.html
docs/reference/feature-selection-page.html
docs/reference/figures/i2dash_header.png
docs/reference/grapes-greater-than-grapes.html
docs/reference/grapes-less-than-greater-than-grapes.html
docs/reference/heatmap.html
docs/reference/index.html
docs/reference/plotly_barplot.html
docs/reference/plotly_boxplot.html
docs/reference/plotly_bubbleplot.html
docs/reference/plotly_scatterplot.html
docs/reference/plotly_violinplot.html
docs/reference/scatterplot.html
docs/reference/summarize_data_.html
docs/reference/summarize_metadata.html
docs/reference/text_output.html
docs/reference/violinplot.html
i2dash.scrnaseq.Rproj
index.md
inst/data/description.md
inst/templates/barplot.Rmd
inst/templates/boxplot.Rmd
inst/templates/bubbleplot.Rmd
inst/templates/dimred_comparison_page.Rmd
inst/templates/dimred_feature_page.Rmd
inst/templates/dimred_sample_page/barplot_group_sizes.Rmd
inst/templates/dimred_sample_page/metadata_plot.Rmd
inst/templates/dimred_sample_page/scatterplot_dimred.Rmd
inst/templates/dimred_sample_page/silhouette_plot.Rmd
inst/templates/feature_expression_page.Rmd
inst/templates/feature_grid.Rmd
inst/templates/feature_selection_page.Rmd
inst/templates/heatmap.Rmd
inst/templates/scatterplot.Rmd
inst/templates/summarize_metadata.Rmd
inst/templates/text_output.Rmd
inst/templates/violinplot.Rmd
man/ComplexHeatmap_heatmap.Rd
man/barplot.Rd
man/boxplot.Rd
man/bubbleplot.Rd
man/correct_name.Rd
man/df_per_func.Rd
man/df_without_grouping.Rd
man/dimred-comparison-page.Rd
man/dimred-feature-page.Rd
man/dimred-sample-page.Rd
man/feature-expression-page.Rd
man/feature-grid-page.Rd
man/feature-selection-page.Rd
man/figures/i2dash_header.png
man/grapes-greater-than-grapes.Rd
man/grapes-less-than-greater-than-grapes.Rd
man/heatmap.Rd
man/plotly_barplot.Rd
man/plotly_boxplot.Rd
man/plotly_bubbleplot.Rd
man/plotly_scatterplot.Rd
man/plotly_violinplot.Rd
man/scatterplot.Rd
man/summarize_data_.Rd
man/summarize_metadata.Rd
man/text_output.Rd
man/violinplot.Rd
pkgdown/_pkgdown.yml
vignettes/Developer_guide.Rmd
vignettes/Documentation.Rmd
vignettes/Quality_metrics.Rmd
vignettes/images/developer_guide/plotly_linking_static.PNG
vignettes/images/documentation/barplot_page.PNG
vignettes/images/documentation/boxplot_page.PNG
vignettes/images/documentation/cell_metadata1.PNG
vignettes/images/documentation/cell_metadata2.PNG
vignettes/images/documentation/colormaps.PNG
vignettes/images/documentation/dimred_comp1.PNG
vignettes/images/documentation/dimred_comp2.PNG
vignettes/images/documentation/dimred_feature.PNG
vignettes/images/documentation/feature_expression.PNG
vignettes/images/documentation/feature_grid_page.PNG
vignettes/images/documentation/feature_selection.PNG
vignettes/images/documentation/heatmap_page.PNG
vignettes/images/documentation/heatmap_settings.PNG
vignettes/images/documentation/scatterplot_feat.PNG
vignettes/images/documentation/scatterplot_label.PNG
vignettes/images/documentation/scatterplot_meta.PNG
vignettes/images/documentation/scatterplot_page.PNG
vignettes/images/documentation/scatterplot_settings.PNG
vignettes/images/documentation/violinplot_page.PNG
vignettes/images/use_case_1/cell_filtering.PNG
vignettes/images/use_case_1/feature_filtering.PNG
vignettes/images/use_case_1/knee_plot.PNG
vignettes/images/use_case_1/metadata_violin.PNG
vignettes/images/use_case_1/summary.PNG
vignettes/images/use_case_2/cell_metadata1.PNG
vignettes/images/use_case_2/cell_metadata2.PNG
vignettes/images/use_case_2/feature_explorer.PNG
vignettes/images/use_case_2/feature_grid.PNG
vignettes/images/use_case_2/heatmap.PNG
vignettes/images/use_case_2/scatterplot.PNG
vignettes/images/use_case_3/dimred_comp1.PNG
vignettes/images/use_case_3/dimred_comp2.PNG
vignettes/images/use_case_3/feature_selection.PNG
vignettes/sc_data_explorer.Rmd
vignettes/vis_parameter_selection.Rmd