inst/data/description.md

In loosolab/i2dash.scrnaseq: Iterative and Interactive Dashboards for single-cell RNA-sequencing data

ScRNAseq of CD45-positive cells from lungs of 2 healthy mice and 2 lung tumor-bearing mice.

References: Rapolas Z. et al. (2019). Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species. Immunity 50, 1317-1334.

Data obtained from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE127465

A sample of the data set with 6000 cells was used:

class: SingleCellExperiment 
dim: 28205 6000 
metadata(0):
assays(1): counts
rownames(28205): 0610007P14Rik 0610009B22Rik ... mt-Nd5 mt-Nd6
rowData names(0):
colnames(6000): bc1593_h_1_1 bc0138_h_1_2 ... bc009_t_2_2 bc0306_h_2_1
colData names(24): Tumor.or.healthy Biological.replicate ... high_subsets_Mito_percent discard
reducedDimNames(1): Spring_redDim
spikeNames(0):
altExpNames(0):

loosolab/i2dash.scrnaseq documentation built on Jan. 1, 2021, 8:23 a.m.