recreate.kproject: recreate kproject

Description Usage Arguments Note Author(s)

Description

Function creates clone of existing project with modification according to values of arguments. NA values will be kept the same as original project

Usage

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recreate.kproject(project, name = NA, constantfiles = NA, templatefiles = NA, 
    paramfile = NA, exec.path = NA, shFile = NA, jobFile = NA, 
    jobCFile = NA, repReg = NA, type = project$type)

Arguments

project

original project to be used as template

name

name for the new project

constantfiles

list of file names containing constant part of the model

templatefiles

list of template file names to be used to create model

paramfile

list of names for parameter file to be generated

exec.path

path to kappa language simulator executables in simulation environment

shFile

run script template file name

jobFile

job management job file template

jobCFile

job management job template file for concurrent simulations

repReg

regular expression to be replaced with number of parameter set

type

type of the project,c('parallel','concurrent','both')

Note

The main reason to have “recreate” method is to have an ability to compare behaviour of various model setups. During the process of “recreation” the only part of the project that is never change is kproject$paramSet. So updated model will be executed with the same set of parameter values make an appropriate comparisons.

Author(s)

Anatoly Sorokin


lptolik/R4Kappa documentation built on May 21, 2019, 7:51 a.m.