| access_template_filepath | Return the file path for a template file stored by the... |
| add_to_spreadsheet_folder | Copy input data file to spreadsheet folder |
| build_project_structure | Build overall project structure |
| cach_object | Cach an object |
| checkpoint | Save an object as a checkpoint in the analysis |
| copy_template_files | Copy files from the package templates, into the local project... |
| create_directory_structure | Create the folder structure |
| create_input_directory | Create a folder named 'input' in the working directory |
| create_output_directory | Create an 'output' folder (with sub-directories) in the... |
| create_R_directory | Create an 'R' folder (with sub-directories) in the working... |
| create_ref_directory | Create a 'ref' folder (with sub-directories) in the working... |
| create_spdsht_directory | Create a 'spreadsheet' folder (with sub-directories) in the... |
| create_test_directory | Create a 'test' folder (with sub-directories) in the working... |
| create_work_directory | Create a 'work' folder (with sub-directories) in the working... |
| load_checkpoint | Load a previous checkpoint object |
| path_to_input | Path to file in input folder |
| path_to_output_data | Path to file in output/final-processed-data folder |
| path_to_output_graphics | Path to file in ouput/graphics folder |
| path_to_output_results | Path to file in output/results folder |
| path_to_R | Path to file in R folder |
| path_to_ref_inspect | Path to file in ref/inspection-exploration folder |
| path_to_R_makefile | Path to file in R/makefile |
| path_to_R_src | Path to file in R/src |
| path_to_spreadsheet | Path to file in spreadsheet folder |
| path_to_test | Path to file in test folder |
| path_to_test_checkpoints | Path to file in test/checkpoint-tests |
| path_to_test_spreadsheet | Path to file in test/spreadsheet-equiv-tests |
| path_to_test_unit | Path to file in test/unit-tests |
| read_cach | Read a cached object |
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