In lter/soilHarmonization: Homogenize LTER Soil Organic Matter Working Group data and notes

data homogenization processing summary and QC check results

files processed:

set.alignment('left')
bind_rows(
  tibble(
    type = "provided data",
    filename = params$param_namesOE
  ),
  tibble(
    type = "homogenized data",
    filename = params$param_namesHmgzd
  )) %>% 
pandoc.table(split.table = Inf, missing = "")

summary of row counts from submitted and homogenized data:

set.alignment('left')
pandoc.table(params$param_rowCount, split.table = Inf, missing = "")
# pandoc.table(data.frame(params$param_rowCount), split.table = Inf, missing = "")

confirm all location-level variables entered into the key file were included in the homogenized data

set.alignment('left')
pandoc.table(params$param_locationVars, split.table = Inf, missing = "")

confirm all profile-level variables entered into the key file were included in the homogenized data

profile data variables expected: r params$param_numProfileOE
profile data variables homogenized: r params$param_numProfileHZ

set.alignment('left')
pandoc.table(params$param_profileVars, split.table = Inf, missing = "")

summary plotting

print(params$param_summaryPlots)

lter/soilHarmonization documentation built on Nov. 8, 2021, 7:56 a.m.