In lter/soilHarmonization: Homogenize LTER Soil Organic Matter Working Group data and notes

data homogenization processing summary and QC check results: r params$param_directory

notes included with key file:

set.alignment('left')
pandoc.table(params$param_notes, split.table = Inf, missing = "")

files processed:

set.alignment('left')
bind_rows(
  tibble(
    type = "provided data",
    filename = params$param_namesOE
  ),
  tibble(
    type = "homogenized data",
    filename = params$param_namesHmgzd
  )) %>% 
pandoc.table(split.table = Inf, missing = "")

variable conversion

# kable(params$param_conversion, format = "pandoc", booktabs = T) %>%
#   kable_styling(full_width = TRUE)

  set.alignment('left')
  pandoc.table(params$param_conversion, split.table = Inf, missing = "")

QC results: location data

if (nrow(params$param_locationQC) == 0) {

  cat("
      location data checks passed")

} else {

  set.alignment('left')
  pandoc.table(params$param_locationQC, split.table = Inf, missing = "")

}

QC results: profile data, data range

if (nrow(params$param_profileRange) == 0) {

  cat("\nprofile data range checks passed")

} else {

  set.alignment('left')
  pandoc.table(params$param_profileRange, split.table = Inf, missing = "")

}

QC results: profile data, data type

if (nrow(params$param_profileType) == 0) {

  cat("\nprofile data type checks passed")

} else {

  set.alignment('left')
  pandoc.table(params$param_profileType, split.table = Inf, missing = "")

}

lter/soilHarmonization documentation built on Nov. 8, 2021, 7:56 a.m.