luannnguyen/CHORD: Classifier of Homologous Recombination Deficiency
CHORD is a random forest model that uses the relative counts of somatic mutation contexts to predict homologous recombination deficiency (HRD). The primary contexts used by CHORD are deletions with flanking microhomology and 1-100kb structural duplications. Additionally, 1-100kb structural duplications are used to distinguish BRCA1-type HRD from BRCA2-type HRD.
Getting started
Browse package contents
Package details |
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| Author | Luan N. Nguyen |
| Maintainer | Luan N. Nguyen <n.l.nguyen-2@umcutrecht.nl> |
| License | MIT |
| Version | 2.03 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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