adapt_dyn: Adaptive dynamics.

In lucasnell/evo_alt_states: Simulations for alternative stable states and coexistence in evolution

Adaptive dynamics.

Description

Adaptive dynamics.

Usage

adapt_dyn(
  eta,
  d,
  q,
  n_reps,
  n = 1,
  V0 = 1,
  N0 = rep(1, n),
  f = 0.1,
  a0 = 1e-04,
  r0 = 0.5,
  sigma_V0 = 1,
  sigma_N = 0,
  sigma_V = 0,
  max_t = 10000L,
  min_N = 1,
  save_every = 10L,
  mut_sd = 0.1,
  mut_prob = 0.01,
  max_clones = 10000,
  show_progress = TRUE,
  n_threads = 1
)

Arguments

eta	Number(s) representing the non-additive effects of traits on the growth rate. Should be a single number or a symmetrical, numeric, q by q matrix.
d	Number(s) that adjusts how the focal line is affected by other lines' trait values. Should be of length 1 or the same as the number of traits. If d < 0, then increases in V_j (trait that reduces competition experienced by clone j) increases competition experienced by clone i, thereby giving conflicting coevolution. Conversely, if d > 0, then increases in V_j decrease competition experienced by clone i, leading to nonconflicting coevolution.
V0	Trait value(s) for each starting clone. For only one starting line, must be a numeric vector or a single matrix row or column.
N0	Abundance(s) for each starting clone. Must be a numeric vector or a single matrix row or column.
f	A single number representing the cost of the trait on the growth rate.
a0	A single number representing the base density dependence.
r0	A single number representing the base growth rate.
max_t	Maximum time simulated.
min_N	Minimum N that's considered extant.
save_every	Number of time steps between when saving information for output.
mut_sd	Standard deviation of the normal distribution used to generate mutated (i.e., daughter) trait values.
mut_prob	Probability of a mutation (creating a daughter lineage).
max_clones	Maximum number of clones predicted. This is used only to reserve memory for some of the inner C++ objects, so when deciding on a value for this, you should choose a high value.
show_progress	Boolean for whether to show a progress bar.

lucasnell/evo_alt_states documentation built on Aug. 17, 2022, 5:34 a.m.