aaeg_dmel_orthologs: Drosophila melanogaster orthologs to Aedes aegypti genes

In luciorq/aaegdata: Aedes aegypti Mosquitoes Molecular Information

Description

This dataset contains the Drosophila melanogaster fruitfly orthologous genes to Aedes aegypti genes with the orthology type and percent identity from D. melanogaster to A. aegypti and from A. aegypti to D. melanogaster, in a data frame. AaegL5.1

Usage

aaeg_dmel_orthologs

Format

a tibble with 7 column which are:

gene

VectorBase gene symbol

dmel_gene

FlyBase gene accession

dmel_gene_name

Drosophila melanogaster gene name

dmel_homology_type

Drosophila melanogaster homology type

dmel_to_aaeg_identity

percentage identity target Drosophila melanogaster gene identical to query gene

aaeg_to_dmel_identity

percentage identity query gene identical to target Drosophila melanogaster gene

dmel_protein

Drosophila melanogaster protein accession

Source

http://biomart.vectorbase.org/biomart/martview?VIRTUALSCHEMANAME=vb_mart_1806&ATTRIBUTES=alvpagwg_eg_gene.default.homologs.ensembl_gene_id|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_ensembl_gene|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_associated_gene_name|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_orthology_type|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_perc_id|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_perc_id_r1|alvpagwg_eg_gene.default.homologs.dmelanogaster_eg_homolog_ensembl_peptide&FILTERS=&VISIBLEPANEL=resultspanel

luciorq/aaegdata documentation built on May 27, 2019, 11:49 p.m.