DEVELOPMENT.md

In luciorq/five: A Framework for Identification of Viral Elements

Files used to test at dicer1 server

NR database

rsync -avz -e 'ssh -p 2205' /data/ref/tick/nr luciorq@150.164.24.106:/data/ref/

NT database

rsync -avz -e 'ssh -p 2205' /data/ref/tick/nt luciorq@150.164.24.106:/data/ref/

Bacterial genome representative genomes

rsync -avz -e 'ssh -p 2205' /media/data/reference/bacterial_genomes/all_bacters.fasta luciorq@150.164.24.106:/data/ref/bacterial/

Ixodes scapularis genome

rsync -avz -e 'ssh -p 2205' /data/ref/tick/ixodes_scapularis-W1.fa luciorq@150.164.24.106:/data/ref/tick/

Aedes aegypti genome

rsync -avz -e 'ssh -p 2205' /data/ref/aae/aaegl5/fasta/aedes-aegypti-lvpagwgchromosomesaaegl5.fa luciorq@150.164.24.106:/data/ref/aae/

Small RNA libraries

rsync -avz -e 'ssh -p 2205' /data/libs/aae/small_rna/SPO-81_42.trim.2.fasta luciorq@150.164.24.106:/data/libs/

rsync -avz -e 'ssh -p 2205' /data/libs/tick/ERR555102.trimmed.fasta luciorq@150.164.24.106:/data/libs/

Docker images

FIVE (base)

bash docker/build_image.sh five_base

FIVE (analysis)

bash docker/build_image.sh five

Change docker tag

docker tag SOURCE_IMAGE[:TAG] TARGET_IMAGE[:TAG]

Pushing Docker image to DockerHub

docker login --username=luciorq

docker push luciorq/five:base

docker push luciorq/five:<VERSION_TAG>

luciorq/five documentation built on May 21, 2019, 2:30 a.m.