GRSN: Global rank invariant normalisation (GRIN)

In lucyleeow/RPPA: Analyse RPPA Data From Zeptosens System

Description

Performs global rank invariant normalisation, as described by Pelz et al..

Usage

GRSN(data, width = 15, height = 5, pointsize = 16,
  filetype = "png", ReportName = NA, count = 5000, f = 0.25)

Arguments

data	Matrix of RFI values with column for each sample.
width	Width (inches) of diagnostic plot.
height	Height (inches) of diagnostic plot.
pointsize	Point size for text of diagnostic plot.
filetype	Diagnostic plot format "png", "wmf", or "postscript"
ReportName	Name for Diagnostic plots.
count	Size of Global Rank-invariant Set to use.
f	Smoother parameter for lowess.

Details

The code for this function was taken from Pelz et al. Some minor changes have been made to allow it to be used for RPPA data.

lucyleeow/RPPA documentation built on May 5, 2019, 3:46 a.m.