API for lucymli/EpiGenR
Combined analysis of epidemiologic and genetic data to infer infectious disease dynamics

Global functions
Phylos2Skyline Source code
SmoothSkylines Source code
add.outgroup Source code
adjust_nodes Source code
align_epi_gen_data Source code
coal.intervals.in.discrete.time Source code
coalescent.intervals.datedPhylo Source code
count_cases Source code
create_mcmc_options Source code
create_params_list Source code
create_tree_from_edges Source code
downsample Source code
example_sim_sir Source code
extract_gglegend Source code
generate.MrBayes.input Source code
generate_cpp_input_files Source code
get.timed.tr Source code
get_data Source code
get_edge_list_by_clade Source code
get_last_tip_time Source code
get_lognormal_params Source code
get_phylo Source code
get_tip_sample_times Source code
get_transmission_tree Source code
ggplot.average.sky Source code
hello Man page
hpd Source code
hpd.Date Source code
num.coal.in.dt Source code
pairwise.distance Source code
plot.mcmc.trace Source code
plot.posterior Source code
rcpp_hello Man page
rlnorm_real Source code
root2tip Source code
root2tip.divergence Source code
run_pMCMC Source code
sampled_from_time_series Source code
sim.seq Source code
simulate_sir Source code
skyline.datedPhylo Source code
skyline.with.sampling Source code
str_to_sentence Source code
sum_every Source code
summarise_clade_edges Source code
time_series_from_line_list Source code
time_series_from_tree Source code
values_ci_to_str Source code
write.GB.to.file Source code
lucymli/EpiGenR documentation built on Oct. 4, 2017, 11:04 p.m.