BalMed_mcmc: This is the main function of balance mediation analysis Runs...
In luhuang-penn/BalMed:

Description Usage Arguments

View source: R/BalMed_mcmc.R

This is the main function of balance mediation analysis Runs a MCMC chain to sampling all the unknown parameters in the model

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BalMed_mcmc(X, Y, Trt, hyperparam, mu0_initial, mu1_initial,
  invSigma_initial, P_initial, z_initial, niters, persaveiters, savepath,
  filename, logfile = "MCMClog.txt")

`X`	compositional matrix
`Y`	outcome vector
`Trt`	treatment vector currently only accept binary value
`hyperparam`	a list containing all the prior distribution informatiion
`niters`	total number of iterations
`persaveiters`	save chain information for each of the persaveiters iterations
`savepath`	the path to save the current chain info
`filename`	the name of the file to save the current chain info
`logfile`	name of the file to store some log information
`mu0_inital`	starting value for the mean in untreated group
`mu1_inital`	starting value for the mean in the treated group
`invSigma_inital`	starting value for the variance-covariance matrix
`P_inital`	starting value for the latent relative abundance matrix
`z_inital`	starting value for the balance configuration vector z