In lujunyan1118/mofaCLL: Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia

Introduction

This document shows a walktrough of the analyses done for the paper "Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia" by Lu J and Cannizzaro E et al.

---

.standalone=FALSE

knitr::opts_chunk$set(warning = FALSE, message = FALSE)
library(mofaCLL)
library(reticulate)
library(DESeq2)
library(sva)
library(MultiAssayExperiment)
library(MOFA)
library(survival)
library(survminer)
library(maxstat)
library(gridExtra)
library(car)
library(cowplot)
library(egg)
library(ggrepel)
library(ggbeeswarm)
library(grImport)
library(fgsea)
library(limma)
library(GEOquery)
library(pheatmap)
library(UpSetR)
library(glmnet)
library(tidygraph)
library(igraph)
library(ggraph)
library(ComplexHeatmap)
library(scattermore)
library(CATALYST)
library(RColorBrewer)
library(circlize)
library(diffcyt)
library(genefilter)
library(lubridate)
library(tidyverse)

---

---

---

---

---

---

---

End of session

sessionInfo()

lujunyan1118/mofaCLL documentation built on Dec. 21, 2021, 12:42 p.m.