runGSEA: Function to run enrichment analysis in R
In lujunyan1118/seahorseCLL: Characterising CLL bioenergetics through Seahorse extracellular flux assay
Description
A funtion to perform GSEA or PAGE analysis
Usage
1
runGSEA(inputTab, gmtFile, GSAmethod = "gsea", nPerm = 1000)
Arguments
inputTab
Ranked gene list for enrichment analysis, gene symbols as rownames and column stat contains the statistics for the ranking.
gmtFile
A path to the gene signature file.
GSAmethod
Method for enrichment analysis, currently supports GSEA and PAGE
nPerm
Number of permutations for GSEA analysis
lujunyan1118/seahorseCLL documentation built on May 12, 2019, 6:16 p.m.
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Description
A funtion to perform GSEA or PAGE analysis
Usage
1 | runGSEA(inputTab, gmtFile, GSAmethod = "gsea", nPerm = 1000)
|
Arguments
inputTab |
Ranked gene list for enrichment analysis, gene symbols as rownames and column stat contains the statistics for the ranking. |
gmtFile |
A path to the gene signature file. |
GSAmethod |
Method for enrichment analysis, currently supports GSEA and PAGE |
nPerm |
Number of permutations for GSEA analysis |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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