Man pages for luke-a-rogers/mmmTMB
Fit Markov Movement Models (MMM) via Template Model Builder
| check_data | Check Data Argument for mmmFit() |
| check_parameters | Check Parameters Argument for mmmFit() |
| check_settings | Check Settings Argument for mmmFit() |
| create_bias_results | Create Fishing Mortality Bias Results |
| create_dispersion_results | Create Dispersion Results |
| create_fishing_results | Create Fishing Rate Results |
| create_mortality_results | Create Natural Mortality Results |
| create_movement_parameters | Create Movement Parameter Array |
| create_movement_rates | Create Movement Rate Array |
| create_movement_results | Create Movement Results |
| create_release_matrix | Create Tag Release Matrix |
| get_convergence_diagnostics | Get Convergence Diagnostics from TMB Model Fit |
| invlogit | Inverse Logit |
| logit | Logit (Log Odds Ratio) |
| matrix_power | Matrix Power |
| mmmBarplot | Barplot Movement Probabilities from an 'mmmTMB' Object |
| mmmControl | Optimization control options |
| mmmFit | Fit a Markov Movement Model |
| mmmGroup | Map Values to Groups |
| mmmHeatmap | Plot Movement Rate Heatmap Matrix |
| mmmIndex | Create Movement Index Matrix |
| mmmLineplot | Lineplot Movement Rates from an 'mmmFit' Object |
| mmmRates | Prepare Rate Data |
| mmmSet | Settings for 'mmmFit()' |
| mmmSim | Simulate Tag Recovery Data |
| mmmTags | Prepare Tag Data |
| mmmWeights | Create Monthly Weighting for Fishing Mortality Rates |
| sensibly_round | Sensibly Round |
| sim_data | Simulated Data |
| subset_by_name | Subset Numeric Vector or Matrix by Rowname, Colname, or Name |
