Files in luke-a-rogers/pbsedm

An R package to implement some of the methods of empirical dynamic modelling

LICENSE.md R/binary.R R/create_lags.R R/create_subset_lags.R R/data.R R/earlier_functions.R R/forecast_metrics.R R/metrics.R R/multivariate_simplex.R R/multiview_embedding.R R/multiview_embedding_original.R R/pbsEDM.R R/pbsEDM_Evec.R R/pbsEDM_optimal_E.R R/pbsSimplex.R R/pbsSmap.R R/plotting.R R/simulate.R R/single_view_embedding.R R/single_view_embedding_for_sve.R R/smap_efficient.R R/smap_surrogates.R R/smap_thetavec.R R/state_space_distances.R R/state_space_distances_for_sve.R R/state_space_forecasts.R R/state_space_forecasts_for_sve.R R/state_space_reconstruction.R R/state_space_reconstruction_for_sve.R R/superset_columns.R R/untransform_forecasts.R R/untransform_predictions.R R/utilities.R R/utils-pipe.R R/weight_single_view_embeddings.R README.md data-raw/Nx_lags_orig.R data-raw/Nx_lags_orig_2.R data-raw/Nx_lags_orig_3.R data-raw/exclusion_radius_test.R data-raw/larkin.R data-raw/ricker.R data-raw/simple_ts.R data-raw/sysdata.R man/EDM_pred_E_2.Rd man/NY_lags_example.Rd man/Nx_lags_orig.Rd man/abs_lag1_scaled_error.Rd man/abs_mean_scaled_error.Rd man/abs_pct_error.Rd man/arctan_abs_pct_error.Rd man/binary.Rd man/check_rEDM_excl_1.Rd man/check_rEDM_excl_2.Rd man/check_rEDM_excl_3.Rd man/create_lags.Rd man/create_subset_lags.Rd man/f.Rd man/forecast_metrics.Rd man/full_calcs_orig.Rd man/gets3dusr.Rd man/larkin.Rd man/maape.Rd man/mae.Rd man/mamse.Rd man/mape.Rd man/mase.Rd man/matric.Rd man/mpe.Rd man/mre.Rd man/multivariate_simplex.Rd man/multiview_embedding.Rd man/multiview_embedding_original.Rd man/pbsDist.Rd man/pbsEDM.Rd man/pbsEDM_Evec.Rd man/pbsEDM_optimal_E.Rd man/pbsLag.Rd man/pbsN.Rd man/pbsSSR.Rd man/pbsSim.Rd man/pbsSimplex.Rd man/pbsSmap.Rd man/pbsX.Rd man/pbsY.Rd man/pbsZ.Rd man/pct_error.Rd man/pipe.Rd man/plot.pbsEDM.Rd man/plot.pbsSim.Rd man/plot_explain_edm.Rd man/plot_explain_edm_all_tstar_movie_save.Rd man/plot_explain_edm_movie.Rd man/plot_explain_edm_movie_save.Rd man/plot_explain_edm_save.Rd man/plot_library_size.Rd man/plot_library_size_save.Rd man/plot_pbsEDM_Evec.Rd man/plot_pbsEDM_Evec_movie_save.Rd man/plot_pbsEDM_Evec_save.Rd man/plot_phase_2d.Rd man/plot_phase_3d.Rd man/plot_pred_obs.Rd man/plot_rho_Evec.Rd man/plot_rho_Evec_save.Rd man/plot_time_series.Rd man/psi_orig.Rd man/rEDM_points.Rd man/raw_error.Rd man/ricker.Rd man/rmse.Rd man/simple_ts.Rd man/single_view_embedding.Rd man/single_view_embedding_for_sve.Rd man/smaape.Rd man/smap_efficient.Rd man/smap_surrogates.Rd man/smap_thetavec.Rd man/srmse.Rd man/state_space_distances.Rd man/state_space_distances_for_sve.Rd man/state_space_forecasts.Rd man/state_space_forecasts_for_sve.Rd man/state_space_reconstruction.Rd man/state_space_reconstruction_for_sve.Rd man/superset_columns.Rd man/untransform_forecasts.Rd man/untransform_predictions.Rd man/weight_single_view_embeddings.Rd tests/testthat.R tests/testthat/test-earlier-functions.R tests/testthat/test-methods.R tests/testthat/test-plots.R tests/testthat/test-utilities.R vignettes/analyse_simple_time_series.Rmd vignettes/aspect_2.Rmd vignettes/mve.Rmd vignettes/mve_understanding.Rmd vignettes/negative_predictions.Rmd vignettes/pbsSmap.Rmd