plot_time_series: Plot the observed time series as either 'N_t' or 'Y_t'

In luke-a-rogers/pbsedm: An R package to implement some of the methods of empirical dynamic modelling

Plot the observed time series as either 'N_t' or 'Y_t'

Description

First value must be 't=1'. For non-differenced values 'N_t', shows the time series with the final values in a different colour, and a title showing the final time step. For first-differenced values 'Y_t', shows the time series of those, plus a one-dimensional phase plot.

Usage

plot_time_series(
  values,
  X.or.N,
  par.mar.ts = c(3, 3, 1, 1),
  max_time = NULL,
  t.axis.range = NULL,
  last.time.to.plot = NULL,
  late.num = 3,
  late.col = "red",
  early.col = "black",
  early.col.lines = "lightgrey",
  start = 1,
  pt.type = "p",
  par.mgp = c(1.5, 0.5, 0),
  add.legend = TRUE,
  label = NULL,
  label.cex = 0.7
)

Arguments

values	vector of values to be plotted
X.or.N	"N" if raw non-differenced data, "X" for differenced data
par.mar.ts	'par(mar)' values
max_time	maximum time value for the time axis
t.axis.range	range of time axis
last.time.to.plot	last time value of N[t] to use when plotting, so final Y[t] used will be Y[t-1] (since Y[t] uses N[t+1])
late.num	final number of 'N[t]' time steps to plot in a different colour
late.col	colour in which to plot final 'late.num' time steps
early.col	colour in which to plot earlier time step points
early.col.lines	colour in which to plot earlier time step points
start	first time step (must be 1)
pt.type	'type' value for 'points()'
par.mgp	'par("mgp")' values
add.legend	logical, whether to add legend to the 'N[t]' time series
label	label to annotate plot, such as '(a)' etc. for six-panel figure
label.cex	size of label annotation

Author(s)

Andrew Edwards

Examples

  plot_time_series(NY_lags_example$N_t, X.or.N = "N")
  plot_time_series(NY_lags_example$Y_t, X.or.N = "X")

luke-a-rogers/pbsedm documentation built on June 3, 2024, 5:20 a.m.