Man pages for luke-a-rogers/pbsedm
An R package to implement some of the methods of empirical dynamic modelling
| abs_lag1_scaled_error | Absolute Lag-1-Scaled Error |
| abs_mean_scaled_error | Absolute Mean-Scaled Error |
| abs_pct_error | Absolute Percentage Error |
| arctan_abs_pct_error | Arctangent Absolute Percentage Error |
| binary | Represent An Integer As A Binary Vector |
| check_rEDM_excl_1 | Prediction results from setting 'exclusionRadius' to 1 in... |
| check_rEDM_excl_2 | Prediction results from setting 'exclusionRadius' to 2 in... |
| check_rEDM_excl_3 | Prediction results from setting 'exclusionRadius' to 3 in... |
| create_lags | Create Lags Of A Vector Or Matrix |
| create_subset_lags | Create Subset Lags |
| EDM_pred_E_2 | Simplex prediction only for 'E=2', only used to run... |
| f | Saturating Functional Response |
| forecast_metrics | Forecast Metrics With Rolling Windows (we don't need for... |
| full_calcs_orig | Full results from a simple simulation model analysed using... |
| gets3dusr | Obtain axes ranges (adapted from function by Uwe Ligges) |
| larkin | Simulated Larkin Sockeye Salmon Population Dynamics |
| maape | Mean Arctangent Absolute Percentage Error |
| mae | Mean Absolute Error |
| mamse | Mean Absolute Mean-Scaled Error |
| mape | Mean Absolute Percentage Error |
| mase | Mean Absolute Lag-1-Scaled Error |
| matric | Metric Wrapper |
| mpe | Mean Percent Error |
| mre | Mean Raw Error |
| multivariate_simplex | Multiview Simplex - Do Simplex for Permutations of Lags |
| multiview_embedding | Multiview Embedding |
| multiview_embedding_original | Multiview Embedding (Luke's original function). |
| Nx_lags_orig | Summary results from a simple simulation model analysed using... |
| NY_lags_example | Summary results from a simple simulation model analysed using... |
| pbsDist | Compute Distances Between Allowed Points in the State Space... |
| pbsEDM | Forecast via Empirical Dynamic Modelling |
| pbsEDM_Evec | Do the 'pbsEDM()' calculation for vector of 'E' values |
| pbsEDM_optimal_E | Do the 'pbsEDM()' calculation for vector of 'E' values and... |
| pbsLag | Return a Lagged Matrix |
| pbsN | Create N Matrix |
| pbsSim | Simulate Three Species Dynamics via Hastings & Powell Model |
| pbsSimplex | Forecast via Simplex Projection |
| pbsSmap | Forecast via S-Mapping |
| pbsSSR | Create State Space Reconstruction Matrix |
| pbsX | Create X Matrix |
| pbsY | Create Y Matrix |
| pbsZ | Create Z Matrix |
| pct_error | Percent Error |
| pipe | Pipe operator |
| plot_explain_edm | 2-d phase plot of x_t v x_t-1 with coloured points to explain... |
| plot_explain_edm_all_tstar_movie_save | Make pdf movie of explain EDM figure for each tstar to go... |
| plot_explain_edm_movie | Create movie to explain EDM |
| plot_explain_edm_movie_save | Make pdf movie of explain EDM figures to go into Supp pdf. |
| plot_explain_edm_save | Create and save encapsulated postscript file for manuscript... |
| plot_library_size | Plot the size of the library for a given 'T' as a function of... |
| plot_library_size_save | Save eps figure of the size of the library for manuscript. |
| plot.pbsEDM | Plot data and results of an object of class 'pbsEDM' as time... |
| plot_pbsEDM_Evec | Plot output from 'pbsEDM_Evec()' as six panel plot, with data... |
| plot_pbsEDM_Evec_movie_save | Make pdf movie of six-panel figure to go into Supp pdf. |
| plot_pbsEDM_Evec_save | Plot output from 'plot_pbsEDM_Evec()' as six panel plot saved... |
| plot.pbsSim | Plot Method for 'pbsSim' |
| plot_phase_2d | Plot 2d phase plot of 'N_t' vs 'N_t-1' or 'Y_t' vs 'Y_t-1' |
| plot_phase_3d | Plot 3d phase plot of 'Y_t' vs 'Y_t-1' vs 'Y_t-2' |
| plot_pred_obs | Plot predictions versus observed values of 'Y_t' for list of... |
| plot_rho_Evec | Plot rho versus 'E' for output from 'pbsEDM_Evec()' |
| plot_rho_Evec_save | Save 'rho' versus 'E' .eps figure for manuscript. |
| plot_time_series | Plot the observed time series as either 'N_t' or 'Y_t' |
| psi_orig | Psi values from a simple simulation model analysed using... |
| raw_error | Raw Error |
| rEDM_points | Predicted and Observed Values from rEDM output |
| ricker | Simulated Ricker Sockeye Salmon Population Dynamics |
| rmse | Root Mean Squared Error |
| simple_ts | Simple example time series |
| single_view_embedding | Single View Embedding - TODO Andy adapting |
| single_view_embedding_for_sve | Single View Embedding (updated version) |
| smaape | Scaled Mean Arctangent Absolute Percentage Error |
| smap_efficient | SMap That Returns Only The Forecast Accuracy |
| smap_surrogates | Perform Surrogate Test For Nonlinearity |
| smap_thetavec | Do the S-map calculations for a vector of 'theta' values |
| srmse | Standardised Root Mean Squared Error |
| state_space_distances | State Space Distance Matrix |
| state_space_distances_for_sve | State Space Distance Matrix for Single View Embedding |
| state_space_forecasts | Empirical Dynamic Modeling Forecasts |
| state_space_forecasts_for_sve | Forecasts for Single View Embedding Based on Only the Nearest... |
| state_space_reconstruction | State Space Reconstruction (SSR) |
| state_space_reconstruction_for_sve | State Space Reconstruction for Single View Embedding (and... |
| superset_columns | Lag Superset Columns |
| untransform_forecasts | Untransform State Space Forecast Values |
| untransform_predictions | Untransform Vector of State Space Predictions |
| weight_single_view_embeddings | Weight Single View Embeddings |
