runSpagedi: Execute SPAGeDi through R console.
In lukembrowne/rSpagedi: Analysis of fine-scale spatial genetic structure data.
Description
Usage
Arguments
Details
Value
Description
Calls SPAGeDi executable via system() function
Usage
1
runSpagedi(input_name, output_name, perm = 999)
Arguments
input_name
\(string\) - Name of SPAGeDi formatted input data file. Must be in
working directory.
output_name
\(string\) - Name of output file. Will overwrite if file
already exists, or create new file if it doesn't
perm
Number of permutations. Default is 999
Details
SPAGeDi must be installed on your system, and able to be run from the
Shell/Terminal. Function is currently configured to run a basic spatial
autocorrelation analysis between individuals using the kinship coefficient
of Loiselle et al. 1995, testing for significance, and jacknifing over loci.
Value
Does not return anything directly, but writes results of analysis to
a tab-delimited text file at output_name.
lukembrowne/rSpagedi documentation built on Sept. 11, 2019, 3:38 a.m.
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Description Usage Arguments Details Value
Description
Calls SPAGeDi executable via system() function
Usage
1 | runSpagedi(input_name, output_name, perm = 999)
|
Arguments
input_name |
\(string\) - Name of SPAGeDi formatted input data file. Must be in working directory. |
output_name |
\(string\) - Name of output file. Will overwrite if file already exists, or create new file if it doesn't |
perm |
Number of permutations. Default is 999 |
Details
SPAGeDi must be installed on your system, and able to be run from the Shell/Terminal. Function is currently configured to run a basic spatial autocorrelation analysis between individuals using the kinship coefficient of Loiselle et al. 1995, testing for significance, and jacknifing over loci.
Value
Does not return anything directly, but writes results of analysis to
a tab-delimited text file at output_name.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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