build.designmatrix.intercept: Constructs a design matrix for running CSIDE with only an...
In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics
build.designmatrix.intercept R Documentation
Constructs a design matrix for running CSIDE with only an intercept term
Description
Constructs a design matrix for running CSIDE with only an intercept term
Usage
build.designmatrix.intercept(myRCTD, barcodes = NULL)
Arguments
myRCTD
an RCTD object with annotated cell types e.g. from the run.RCTD function.
barcodes
(default NULL) the barcodes, or pixel names, of the SpatialRNA object to be used when creating the design matrix.
Value
A design matrix containing the covariates for running CSIDE. The rownames represent pixel names and
are a subset of the pixels in the SpatialRNA object. The column represents the intercept
lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.
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| build.designmatrix.intercept | R Documentation |
Constructs a design matrix for running CSIDE with only an intercept term
Description
Constructs a design matrix for running CSIDE with only an intercept term
Usage
build.designmatrix.intercept(myRCTD, barcodes = NULL)
Arguments
myRCTD |
an |
barcodes |
(default NULL) the barcodes, or pixel names, of the |
Value
A design matrix containing the covariates for running CSIDE. The rownames represent pixel names and
are a subset of the pixels in the SpatialRNA object. The column represents the intercept
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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