lwaldron/doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Getting started

Package details

Bioconductor views GeneExpression ImmunoOncology Microarray QualityControl RNASeq
Maintainer
LicenseGPL (>=2.0)
Version1.35.0
URL https://github.com/lwaldron/doppelgangR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("lwaldron/doppelgangR")
lwaldron/doppelgangR documentation built on Nov. 2, 2024, 9:28 a.m.