sim_outbreak_static_sn: Simulation of outbreak in static network

In lwhittles/simdynet: simdynet project

Description

Simulation of outbreak in static network

Usage

sim_outbreak_static_sn(N = 10000, gamma = 1.8, k0 = 0.5,
  phi = 10000, n_infs = 1, beta = 1, psi = 1, sigma = 1,
  nu = 1, eta = 1, mu = 1, rho = 0, t = 1, max.iter = 1e+06,
  sn = 0)

Arguments

N	network size
gamma	exponent of power law distribution
k0	parameter controlling proportion of unpartnered
phi	parameter controlling relationship turnaround rate
n_infs	number of initially infected individuals
beta	rate of transmission per partnership
psi	proportion of infections becoming symptomatic
sigma	reciprocal of duration of incubation period
nu	reciprocal of duration of carriage
eta	rate of screening when asymptomatic
mu	reciprocal of time to seeking treatment
rho	reciprocal of time to recovery following treatment
t	duration of outbreak simulation
max.iter	maximum number of Gillespie iterations
sn	sexual network, if pre-computed

lwhittles/simdynet documentation built on May 5, 2019, 9:20 a.m.