Description Usage Arguments Value Author(s) Examples
batch_search
returns the dataframe of all the database search results.
using the following code to install the dependencies:
install.packages(c("httr", "progress", "RJSONIO"))
1 2 3 4 5 | msms_search(ion_mass, ms_ms_peaks, precursor_ion_tolerance = 100,
precursor_ion_tolerance_mode = "mDa", precursor_mz_tolerance = 500,
precursor_mz_tolerance_mode = "mDa", ion_mode,
ionization_voltage = "all", spectra_types = "experimental",
cmm_url = "http://ceumass.eps.uspceu.es/mediator/api/msmssearch")
|
ion_mass |
ion_mass |
ms_ms_peaks |
ms_ms_peaks |
precursor_ion_tolerance |
precursor_ion_tolerance |
precursor_ion_tolerance_mode |
precursor_ion_tolerance_mode |
precursor_mz_tolerance |
precursor_mz_tolerance |
precursor_mz_tolerance_mode |
precursor_mz_tolerance_mode |
ion_mode |
ion_mode |
ionization_voltage |
ionization_voltage |
spectra_types |
spectra_types |
cmm_url |
"http://ceumass.eps.uspceu.es/mediator/api/msmssearch" or your local one |
If all inputs are all correctly formatted, a dataframe will be returned for the result.
Yaoxiang Li yl814@georgetown.edu
Georgetown University, USA
License: GPL (>= 3)
1 2 3 4 5 6 7 8 9 10 11 12 | ms_ms_peaks = matrix(
c(40.948, 0.174,
56.022, 0.424,
84.37, 53.488,
101.50, 8.285,
102.401, 0.775,
129.670, 100.000,
146.966, 20.070),
ncol = 2,
byrow = TRUE)
msms_search(ion_mass = 147, ms_ms_peaks = ms_ms_peaks, ion_mode = 'positive')
|
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