example_space: Example bi-dimensional space data

In maRce10/PhenotypeSpace: Quantifying phenotypic spaces

Example bi-dimensional space data

Description

example_space is a data frame with 1550 observations of a simulated phenotypic tri-dimensional space including 5 groups.

Usage

data(example_space)

Format

An object of class data.frame with 1550 rows and 5 columns.

Source

Marcelo Araya Salas, PhenotypeSpace

Examples

{
# load data
data("example_space")

#plot space in 2 dimensions
xs <- tapply(example_space$dimension_1, example_space$group, mean)
ys <- tapply(example_space$dimension_2, example_space$group, mean)
plot(example_space[, c("dimension_1", "dimension_2")], 
   col = example_space$color, pch = 20, cex = 1.8)
text(xs, ys, labels = names(xs), cex = 2.5)


# Install and load necessary libraries
rlang::check_installed("plotly")

library(plotly)

# plot space in 4 dimensions
plot_ly(
data = example_space,
x = ~dimension_1,
y = ~dimension_2,
z = ~dimension_3,
type = "scatter3d",
mode = "markers",
alpha = 0.8,
marker = list(size = 4),
color = ~ group,
colors = unique(example_space$color) 
)
}

maRce10/PhenotypeSpace documentation built on July 3, 2025, 8:44 p.m.