Man pages for maRce10/warbleR
Streamline Bioacoustic Analysis
| autodetec | alternative name for 'auto_detec' |
| auto_detec | 'auto_detec' automatically detects the start and end of... |
| by_element_est | Convert a by-song extended selection table to by-element |
| catalog | Create catalogs of vocal signals |
| catalog2pdf | Combine 'catalog' images into pdfs |
| checksels | alternative name for 'check_sels' |
| check_sels | Check selection data frames |
| check_sound_files | Check sound files |
| check_wavs | alternative name for 'check_sound_files' |
| color_spectro | Highlight spectrogram regions |
| color.spectro | alternative name for 'color_spectro' |
| compare_methods | Assessing the performance of acoustic distance measurements |
| comp_matrix | Example matrix listing selections to be compared by... |
| consolidate | Consolidate (sound) files into a single directory |
| coor.graph | alternative name for 'plot_coordination' |
| coor.test | alternative name for 'test_coordination' |
| cross_correlation | Time-frequency cross-correlation |
| cut_sels | Cut selections into individual sound files |
| dfDTW | alternative name for 'freq_DTW' |
| df_DTW | alternative name for 'freq_DTW' |
| duration_sound_files | Measure the duration of sound files |
| duration_wavs | alternative name for 'duration_sound_files' |
| envelope | Calculates the absolute amplitude envelope |
| ffDTW | deprecated functions and function names |
| filtersels | alternative name for 'filter_sels' |
| filter_sels | Subset selection data frames based on manually filtered image... |
| find_clipping | Find clipped selections |
| find_peaks | Find cross-correlation peaks |
| fix_extended_selection_table | Fix extended selection tables |
| fixwavs | alternative name for 'fix_wavs' |
| fix_wavs | Fix .wav files to allow importing them into R |
| frange | alternative name for 'freq_range' |
| frange.detec | alternative name for 'freq_range_detec' |
| freq_DTW | Acoustic dissimilarity using dynamic time warping on dominant... |
| freq_range | Detect frequency range iteratively |
| freq_range_detec | Detect frequency range on wave objects |
| freq_ts | Extract frequency contours as time series |
| full_spectrogram2pdf | 'full_spectrogram2pdf' combines 'full_spectrograms' images in... |
| full_spectrograms | Create long spectrograms of entire sound files |
| gaps | Gap duration |
| image_to_wave | Convert images into wave objects |
| inflections | Count number of inflections in a frequency contour |
| info_sound_files | Get sound file parameter information |
| info_wavs | alternative name for 'info_sound_files' |
| internals | 'warbleR' Internal Functions |
| is_extended_selection_table | Class 'extended_selection_table': selection table containing... |
| is_selection_table | Class 'selection_table': double-checked frequency/time... |
| lbh_selec_table | Example data frame of selections (i.e. selection table). |
| lbh_selec_table2 | Example data frame of selections (i.e. selection table). |
| lspec | alternative name for 'full_spectrograms' |
| lspec2pdf | alternative name for 'full_spectrogram2pdf' |
| make.selection.table | Old name for 'selection_table' |
| map_xc | Maps of 'Xeno-Canto' recordings by species |
| mfcc_stats | Calculate descriptive statistics on Mel-frequency cepstral... |
| move_images | Move/copy image files between directories |
| move_imgs | alternative name for 'move_images' |
| mp32wav | Convert .mp3 files to .wav |
| mp3_2_wav | alternative name for 'mp32wav' |
| multi_DTW | A wrapper on 'dtwDist' for comparing multivariate contours |
| open_wd | Open working directory |
| overlapping_sels | Find overlapping selections |
| ovlp_sels | alternative name for 'overlapping_sels' |
| phylo_spectro | Add spectrograms onto phylogenetic trees |
| plot_coordination | Coordinated singing graphs |
| print.autodetec.output | print method for class 'autodetec.output' |
| print.extended_selection_table | print method for class 'extended_selection_table' |
| print.find_peaks.output | print method for class 'xcorr.output' |
| print.selection_table | print method for class 'selection_table' |
| print.xcorr.output | print method for class 'xcorr.output' |
| querxc | alternative name for 'query_xc' |
| query_xc | Access 'Xeno-Canto' recordings and metadata |
| rbind.extended_selection_table | rbind method for class 'extended_selection_table' |
| rbind.selection_table | rbind method for class 'selection_table' |
| read_sound_file | An extended version of read_wave that reads several sound... |
| read_wave | A wrapper for tuneR's readWave that read sound files listed... |
| remove_channels | Remove channels in wave files |
| remove_silence | Remove silence in wave files |
| rename_est_waves | Rename wave objects and associated metadata in extended... |
| rename_waves_est | alternative name for 'rename_est_waves' |
| resample_est | Resample wave objects in a extended selection table |
| resample_est_waves | alternative name for 'resample_est' |
| rm_channels | alternative name for 'remove_channels' |
| rm_sil | alternative name for 'remove_silence' |
| selec.table | Alternative name for 'lbh_selec_table' |
| selection_table | Create 'selection_table' and 'extended_selection_table'... |
| seltailor | alternative name for 'tailor_sels' |
| sig2noise | Measure signal-to-noise ratio |
| signal_2_noise | alternative name for 'sig2noise' |
| sim_coor_sing | Simulated coordinated singing events. |
| sim_songs | alternative name for 'simulate_songs' |
| simulate_songs | Simulate animal vocalizations |
| snrspecs | alternative name for 'snr_spectrograms' |
| snr_specs | alternative name for 'snr_spectrograms' |
| snr_spectrograms | Spectrograms with background noise margins |
| song_analysis | Calculates acoustic parameters at the song level |
| sort_colms | Sort columns in a more intuitive order |
| sound_pressure_level | Measure relative sound pressure level |
| specan | alternative name for 'spectro_analysis' |
| spec_param | alternative name for 'tweak_spectro' |
| specreator | alternative name for 'spectrograms' |
| spectro_analysis | Measure acoustic parameters in batches of sound files |
| spectrograms | Spectrograms of selected signals |
| split_sound_files | Splits sound files |
| split_wavs | alternative name for 'split_sound_files' |
| sth_annotations | Example data frame of annotations from a Scale-throated... |
| sub-.extended_selection_table | extract method for class 'extended_selection_table' |
| sub-.selection_table | extract method for class 'selection_table' |
| tailor_sels | Interactive view of spectrograms to tailor selections |
| test_coordination | Randomization test for singing coordination |
| track_freq_contour | Spectrograms with frequency measurements |
| trackfreqs | alternative name for 'track_freq_contour' |
| track_harmonic | Track harmonic frequency contour |
| try_na | Wrapper for "try" function |
| tweak_spectro | Plot a mosaic of spectrograms with varying display parameters |
| warbleR | warbleR: A package to streamline bioacoustic analysis |
| warbleR_options | Setting warbleR options |
| wav_2_flac | Convert .wav files to .flac |
| wavdur | alternative name for 'duration_sound_files' |
| wav_dur | alternative name for 'duration_sound_files' |
| wav_info | alternative name for 'info_sound_files' |
| wpd_features | Measure wavelet packet decomposition features (EXPERIMENTAL) |
| xcmaps | alternative name for 'map_xc' |
| xcorr | alternative name for 'cross_correlation' |
