qc_cu: Quality Control - Channel Unit Data
In mackerman44/DASH: DASH: Drone Assisted Stream Habitat

qc_cu

R Documentation

Quality Control - Channel Unit Data

Description

Quality control channel unit data (e.g., from CU_1.csv files) imported using read_otg_csv() or read_otg_csv_wrapper().

Usage

qc_cu(
  qc_df = NULL,
  cols_to_check_nas = c("Channel Segment Number", "Channel Unit Number",
    "Channel Unit Type", "Maximum Depth (m)", "TOS", "BOS"),
  valid_cus = c("Pool", "Run", "Riffle", "OCA", "Rapid+", "SSC"),
  ted_min = 0,
  ted_max = 2,
  md_min = 0,
  md_max = 3,
  cover_columns = c("Overhanging (%)", "Aquatic Vegetation (%)", "Woody Debris (%)",
    "Artificial (%)", "Total No Cover (%)"),
  cov_max = 130,
  ocular_columns = c("Sand/Fines <2mm (%)", "Gravel 2-64mm (%)",
    "Cobble 64-256mm (%)", "Boulder >256mm (%)"),
  peb_min = 0.03,
  peb_max = 1024
)

Arguments

`qc_df`	The survey data frame to be QC'd
`cols_to_check_nas`	columns to check for NAs in
`valid_cus`	character vector of valid channel unit types
`ted_min`	minimum acceptable value for thalweg exit depth
`ted_max`	maximum acceptable value for thalweg exit depth
`md_min`	minimum acceptable value for max channel unit depth
`md_max`	maximum acceptable value for max channel unit depth
`cover_columns`	character vector of column names for fish cover estimates
`cov_max`	maximum value that cover estimates can sum to
`ocular_columns`	character vector of column names for ocular substrate estimates
`peb_min`	minimum acceptable size for pebble size (mm)
`peb_max`	maximum acceptable size for pebble size (mm)