Files in macs3-project/MACSr
MACS: Model-based Analysis for ChIP-Seq
.BBSoptions
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllClasses.R
R/MACSr-package.R
R/basilisk.R
R/bdgbroadcall.R
R/bdgcmp.R
R/bdgdiff.R
R/bdgopt.R
R/bdgpeakcall.R
R/callpeak.R
R/callvar.R
R/cmbreps.R
R/filterdup.R
R/hmmratac.R
R/pileup.R
R/predictd.R
R/python.R
R/randsample.R
R/refinepeak.R
README.md
_pkgdown.yml
configure
configure.win
docs/404.html
docs/LICENSE-text.html
docs/articles/MACSr.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/MACSr-package.html
docs/reference/MACSr.html
docs/reference/Rplot001.png
docs/reference/bdgbroadcall.html
docs/reference/bdgcmp.html
docs/reference/bdgdiff.html
docs/reference/bdgopt.html
docs/reference/bdgpeakcall.html
docs/reference/callpeak.html
docs/reference/callvar.html
docs/reference/cmbreps.html
docs/reference/filterdup.html
docs/reference/hmmratac.html
docs/reference/index.html
docs/reference/macsList-class.html
docs/reference/pileup.html
docs/reference/predictd.html
docs/reference/randsample.html
docs/reference/refinepeak.html
docs/sitemap.xml
inst/extdata/CTCF_PE_CTRL_chr22_50k.bam.bai
inst/extdata/CTCF_PE_CTRL_chr22_50k.bedpe.gz
inst/extdata/CTCF_PE_ChIP_chr22_50k.bam.bai
inst/extdata/CTCF_PE_ChIP_chr22_50k.bedpe.gz
inst/extdata/CTCF_SE_CTRL_chr22_50k.bed.gz
inst/extdata/CTCF_SE_ChIP_chr22_50k.bed.gz
inst/extdata/callvar_testing.narrowPeak
inst/extdata/run_callpeak_bampe_broad_peaks.broadPeak
inst/extdata/run_callpeak_bampe_narrow_peaks.narrowPeak
inst/extdata/run_callpeak_bedpe_broad_peaks.broadPeak
inst/extdata/run_callpeak_bedpe_narrow_peaks.narrowPeak
inst/extdata/run_callpeak_broad_peaks.broadPeak
inst/extdata/run_callpeak_narrow0_peaks.narrowPeak
inst/extdata/run_callpeak_narrow0_treat_pileup.bdg
inst/extdata/run_callpeak_narrow1_peaks.narrowPeak
inst/extdata/run_callpeak_narrow2_peaks.narrowPeak
inst/extdata/run_callpeak_narrow3_peaks.narrowPeak
inst/extdata/run_callpeak_narrow4_peaks.narrowPeak
inst/extdata/run_callpeak_narrow5_peaks.narrowPeak
inst/extdata/run_callpeak_narrow_revert_control_lambda.bdg
inst/extdata/run_callpeak_narrow_revert_treat_pileup.bdg
inst/extdata/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak
inst/extdata/run_filterdup_result.bed.gz
inst/extdata/run_pileup_CTRL.bed.bdg
inst/extdata/run_pileup_ChIP.bed.bdg
man/MACSr.Rd
man/bdgbroadcall.Rd
man/bdgcmp.Rd
man/bdgdiff.Rd
man/bdgopt.Rd
man/bdgpeakcall.Rd
man/callpeak.Rd
man/callvar.Rd
man/cmbreps.Rd
man/filterdup.Rd
man/hmmratac.Rd
man/macsList-class.Rd
man/pileup.Rd
man/predictd.Rd
man/randsample.Rd
man/refinepeak.Rd
tests/testthat.R
tests/testthat/test-init.R
tests/testthat/test.py
vignettes/.gitignore
vignettes/MACSr.Rmd
