importSRL: Import an SRL.

In madeleineotway/dialects: Data Independent Acquisition Library Editing to Convert The Species

Description

This function imports a spectral reference library (SRL) in either PeakView/OneOmics or OpenSWATH formats.

Usage

importSRL(filepath = NULL, SRL.format = "peakview")

Arguments

filepath	Full path to SRL file. I.e. /path/to/SRL.file
SRL.format	The format of the SRL. Either "peakview" for PeakView or OneOmics SRLs or "openswath" for OpenSWATH SRLs. Defaults to "peakview".

Value

SRL

Note

PeakView and OneOmics SRLs must be .txt format. OpenSWATH must be either .tsv or .csv format.

Author(s)

Madeleine J Otway [e-mail]

Examples

srl_pv <- system.file("extdata",
                      "rat_srl_example.txt",
                      package = "dialects")
importSRL(srl_pv)
importSRL(srl_pv, SRL.format = "peakview")

#srl-os <- system.file("extdata", "SRL-OS", package = "dialects")
#importSRL(srl-os, SRL.format = "openswath")

madeleineotway/dialects documentation built on May 29, 2019, 3:43 a.m.