cluster.cells: Cluster cells based on shape
In maekiniemi/yeastTracker:
Description
Usage
Arguments
Examples
Description
This function loads ImageJ roi zip files.
It returns a list object with rois normalized into coordinate system as well as mother/bud relations.
Usage
1
cluster.cells(yeastCells, K = 3)
Arguments
x
an ROI object from read.ijzip().
THRESHOLD
an integer value specifying the area in pixels needed for an overlap to count as mother/budded relation. Default value is 100.
borderCol
color value for overlap boundary.
Examples
1
2
3
4
filename<-system.file('data/YET629_02_w1L488nm-L561nm_sequence-10000.zip', package='yeast')
roi <- read.ijzip(filename)
yeastCells<-get.buds(roi)
cluster.cells(yeastCells)
maekiniemi/yeastTracker documentation built on June 9, 2020, 1:40 p.m.
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Description Usage Arguments Examples
Description
This function loads ImageJ roi zip files. It returns a list object with rois normalized into coordinate system as well as mother/bud relations.
Usage
1 | cluster.cells(yeastCells, K = 3)
|
Arguments
x |
an ROI object from read.ijzip(). |
THRESHOLD |
an integer value specifying the area in pixels needed for an overlap to count as mother/budded relation. Default value is 100. |
borderCol |
color value for overlap boundary. |
Examples
1 2 3 4 | filename<-system.file('data/YET629_02_w1L488nm-L561nm_sequence-10000.zip', package='yeast')
roi <- read.ijzip(filename)
yeastCells<-get.buds(roi)
cluster.cells(yeastCells)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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