treemap_TLs: treemap_TLs

In magnusnosnes/GeoLineages: Transmission Lineages From Maximum Likelihood Mappings

treemap_TLs

Description

treemap_TLs creates a treemap visualization of the Lineage Homology results, showing the group number, group size, and time-to-most-recent-common-ancestor (TMRCA) for each lineage. The treemap is color-coded based on the TMRCA values, with a user-specified range or calculated range from the data.

Usage

treemap_TLs(Result_LineageHomology, date_gradient = NULL)

Arguments

Result_LineageHomology	The output from LineageHomology.
date_gradient	A user-specified range for the TMRCA values to be plotted. If not provided, the range will be calculated from the data.

Value

A treemap visualization of the results in the TL assignment from LineageHomology, showing the group number, group size, and TMRCA for each lineage.

magnusnosnes/GeoLineages documentation built on April 17, 2025, 6:29 p.m.