Man pages for mal2017/rosy
Super enhancers in R.
| bindRseCols | Combine RangedSummarizedExperiments |
| call_super_cutoff_internal | Call 'supers' on a vector of values. |
| call_supers_internal | Call 'supers' on a RSE. Adds to an assay slot named... |
| closest_gene_internal | Call the closest gene for a gr and a txdb |
| equivalentAssays | Check two RangedSummarizedExperiments have the same assays. |
| equivalentRanges | Check two RangedSummarizedExperiments use the same ranges |
| extend_merge_internal | Extend GRanges by the specified distance |
| getChrNameFromGr | Get 1 chr name from a GR and confirm all are from same level. |
| get_grl_entry_width_internal | Get the total with of a GRL element. |
| get_stitch_region_widths_internal | Get all GRL entry widths. |
| get_stitch_stats_internal | Get the stitch stats for a range of distances so rosy can... |
| hello | Hello, World! |
| liquidate_internal | Find signal from a bam within regions. |
| normalize_mrip_internal | Scale signal in RangedSummarizedExperiment by MRIP. |
| normalize_perbp_internal | Scale signal in RangedSummarizedExperiment per BP. |
| pts_below | optimize for the value of this function when calling supers |
| rose_single_internal | Run rose stitching + quant for a single sample. |
| rosy | Run rosy. |
| sds2tbl | rdname sds2tbl |
| sds2tbl_single_internal | Convert an SE dataset to a tibble for plotting and downstream... |
| seGrlNames | Rename GRangesList in human readable coords. |
| stitch | Stitch ranges within 'stitchDist' of each other. |
| stitch_internal | Stitch GRanges within specified distance |
