rose_single_internal: Run rose stitching + quant for a single sample.
In mal2017/rosy: Super enhancers in R.
Description
Will take only a single set of regions and reads.
Usage
1
2
rose_single_internal(regions, reads, paired = F, colData = NULL,
stitchDist = 12500, se_cutoff = "optimize")
Arguments
regions
GRanges or path to bed.
reads
Object or path to file containing reads.
paired
Logical indicating paired-end reads.
colData
dataframe with sample information.
mal2017/rosy documentation built on May 17, 2019, 3:12 a.m.
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Description
Will take only a single set of regions and reads.
Usage
1 2 | rose_single_internal(regions, reads, paired = F, colData = NULL,
stitchDist = 12500, se_cutoff = "optimize")
|
Arguments
regions |
GRanges or path to bed. |
reads |
Object or path to file containing reads. |
paired |
Logical indicating paired-end reads. |
colData |
dataframe with sample information. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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