control_for: Adjust for variables and activate any biasing paths that...

In malcolmbarrett/ggdag: Analyze and Create Elegant Directed Acyclic Graphs

Adjust for variables and activate any biasing paths that result

Description

Adjust for variables and activate any biasing paths that result

Usage

control_for(.tdy_dag, var, as_factor = TRUE, activate_colliders = TRUE, ...)

adjust_for(.tdy_dag, var, as_factor = TRUE, activate_colliders = TRUE, ...)

ggdag_adjust(
  .tdy_dag,
  var = NULL,
  ...,
  size = 1,
  edge_type = c("link_arc", "link", "arc", "diagonal"),
  node_size = 16,
  text_size = 3.88,
  label_size = text_size,
  text_col = "white",
  label_col = "black",
  edge_width = 0.6,
  edge_cap = 10,
  arrow_length = 5,
  use_edges = TRUE,
  use_nodes = TRUE,
  use_stylized = FALSE,
  use_text = TRUE,
  use_labels = FALSE,
  text = NULL,
  label = NULL,
  node = deprecated(),
  stylized = deprecated(),
  collider_lines = TRUE
)

Arguments

.tdy_dag	input graph, an object of class tidy_dagitty or dagitty
var	a character vector, the variable(s) to adjust for.
as_factor	logical. Should the adjusted column be a factor?
activate_colliders	logical. Include colliders activated by adjustment?
...	additional arguments passed to tidy_dagitty()
size	A numeric value scaling the size of all elements in the DAG. This allows you to change the scale of the DAG without changing the proportions.
edge_type	The type of edge, one of "link_arc", "link", "arc", "diagonal".
node_size	The size of the nodes.
text_size	The size of the text.
label_size	The size of the labels.
text_col	The color of the text.
label_col	The color of the labels.
edge_width	The width of the edges.
edge_cap	The size of edge caps (the distance between the arrowheads and the node borders).
arrow_length	The length of arrows on edges.
use_edges	A logical value. Include a ⁠geom_dag_edges*()⁠ function? If TRUE, which is determined by edge_type.
use_nodes	A logical value. Include geom_dag_point()?
use_stylized	A logical value. Include geom_dag_node()?
use_text	A logical value. Include geom_dag_text()?
use_labels	A logical value. Include geom_dag_label_repel()?
text	The bare name of a column to use for geom_dag_text(). If use_text = TRUE, the default is to use name.
label	The bare name of a column to use for geom_dag_label_repel(). If use_labels = TRUE, the default is to use label.
node	Deprecated.
stylized	Deprecated.
collider_lines	logical. Should the plot show paths activated by adjusting for a collider?

Value

a tidy_dagitty with a adjusted column for adjusted variables, as well as any biasing paths that arise, or a ggplot

Examples

dag <- dagify(m ~ a + b, x ~ a, y ~ b)

control_for(dag, var = "m")
ggdag_adjust(dag, var = "m")

malcolmbarrett/ggdag documentation built on March 8, 2024, 5:49 p.m.