rename_OTU | R Documentation |
rename_OTU
assigns a non - repeated name to each bacteria for a given
taxonomic level.
rename_OTU(phy, rank, db = "SILVA")
phy |
the phyloseq object where the information is contained. |
rank |
a |
db |
the bacterial database used to name each OTU of the phyloseq object: SILVA (default) or GreenGenes. |
A vector with the names for each bacteria. It has not repeated names and none of them starts with Incertae_Sedis or unclassified.
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