Files in mandymejia/BayesGLMfMRI

Spatial Bayesian Methods for Task Functional MRI Studies

LICENSE.md NEWS.md R/BayesGLM.R R/BayesGLM2.R R/BayesGLM2_Bayes_utils.R R/BayesGLM_check_data_inputs.R R/BayesGLM_format_cifti.R R/BayesGLM_session_names.R R/BayesGLM_utils.R R/BayesfMRI-package.R R/EM_utils.R R/GLM_Bayesian_EM.R R/GLM_FIR.R R/GLM_classical.R R/GLM_compare.R R/GLM_est_resid_var_pw.R R/INLA_deps.R R/RcppExports.R R/SPDE_from_vertex.R R/SPDE_from_voxel.R R/activations.R R/activations.methods.R R/boundary.R R/checkX.R R/excursions.R R/fit_bayesglm.R R/fit_bayesglm_utils.R R/intersect_mask.R R/make_A_mat.R R/make_mesh.R R/make_spde_surf.R R/make_spde_vol.R R/methods.BayesGLM.R R/methods.BayesGLM2.R R/methods.fit_bglm.R R/nV_definitions.R R/plot.R R/prevalence.R R/prevalence.methods.R R/prevalence_utils.R R/prewhitening.R R/retro_mask.R R/rox_args_docs.R R/rox_args_docs_BayesGLM.R R/scale_BOLD.R R/sparse_and_PW.R R/summarize_sessions.R R/util.R R/vertex_areas.R R/vol2spde.R README.Rmd README.md cran-comments.md man/AICc.Rd man/BOLD_Param_BayesGLM.Rd man/BayesGLM.Rd man/BayesGLM2.Rd man/BayesGLM_argChecks.Rd man/BayesGLM_format_cifti.Rd man/BayesGLM_format_design.Rd man/BayesGLM_format_nuisance.Rd man/BayesGLM_format_scrub.Rd man/BayesGLM_is_valid_one_design.Rd man/BayesGLM_is_valid_one_nuisance.Rd man/BayesGLM_is_valid_one_scrub.Rd man/BayesGLM_session_names.Rd man/Bayes_Param.Rd man/BayesfMRI-package.Rd man/Connectome_Workbench_Description.Rd man/ELL.Rd man/EM_Param.Rd man/F.logwt.Rd man/GLMEM_fixptseparate.Rd man/GLMEM_objfn.Rd man/GLM_classical.Rd man/GLM_compare.Rd man/GLM_est_resid_var_pw.Rd man/INLA_Description.Rd man/INLA_Latent_Fields_Limit_Description.Rd man/INLA_deps.Rd man/Q_prime.Rd man/SPDE_from_vertex.Rd man/SPDE_from_voxel.Rd man/TR_Param_BayesGLM.Rd man/TrQEww.Rd man/TrQbb.Rd man/TrSigB.Rd man/activations.Rd man/activations.classical.Rd man/activations.posterior.Rd man/aic_Param.Rd man/ar_order_Param.Rd man/ar_smooth_Param.Rd man/beta.posterior.thetasamp.Rd man/brainstructures_Param_BayesGLM.Rd man/buffer_Param.Rd man/cbind2.Rd man/check_INLA.Rd man/cholQsample.Rd man/contrasts_Param.Rd man/create_listRcpp.Rd man/design_Param_BayesGLM.Rd man/dgCMatrix_cols_to_zero.Rd man/do_QC.Rd man/dot-findTheta.Rd man/dot-getSqrtInvCpp.Rd man/dot-initialKP.Rd man/dot-logDetQt.Rd man/emTol_Param.Rd man/extract_estimates.Rd man/faces_Param.Rd man/field_names_Param.Rd man/fit_bayesglm.Rd man/galerkin_db.Rd man/get_nV.Rd man/get_posterior_densities.Rd man/get_posterior_densities2.Rd man/hpf_Param_BayesGLM.Rd man/init_fixpt.Rd man/init_objfn.Rd man/intersect_mask.Rd man/is_matrix_or_df.Rd man/kappa_init_fn.Rd man/log_kappa_tau.Rd man/make_A_mat.Rd man/make_A_mat_rs.Rd man/make_Q.Rd man/make_data_list.Rd man/make_mesh.Rd man/make_replicates.Rd man/make_sqrtInv_all.Rd man/mask_Param_vertices.Rd man/max_threads_Param.Rd man/mean_var_Tol_Param.Rd man/mesh_Param_either.Rd man/mesh_Param_inla.Rd man/n_threads_Param.Rd man/nbhd_order_Param.Rd man/neg_kappa_fn.Rd man/neg_kappa_fn2.Rd man/neg_kappa_fn3.Rd man/neg_kappa_fn4.Rd man/nuisance_Param_BayesGLM.Rd man/plot.BGLM.Rd man/plot.BGLM2.Rd man/plot.act_BGLM.Rd man/plot.prev_BGLM.Rd man/prep_kappa2_optim.Rd man/prevalence.Rd man/pw_estimate.Rd man/pw_smooth.Rd man/qsample.Rd man/resamp_res_Param_BayesGLM.Rd man/retro_mask_act.Rd man/retro_mask_fit_bglm.Rd man/retro_mask_mesh.Rd man/return_INLA_Param.Rd man/s2m.Rd man/s2m_B.Rd man/scale_BOLD.Rd man/scale_BOLD_Param.Rd man/scale_design_mat.Rd man/scrub_Param_BayesGLM.Rd man/seed_Param.Rd man/session_names_Param.Rd man/sparse_and_PW.Rd man/spde_Q_phi.Rd man/summary.BGLM.Rd man/summary.BGLM2.Rd man/summary.act_BGLM.Rd man/summary.act_fit_bglm.Rd man/summary.fit_bglm.Rd man/summary.fit_bglm2.Rd man/summary.prev_BGLM.Rd man/summary.prev_fit_bglm.Rd man/surfaces_Param_BayesGLM.Rd man/trim_INLA_Param.Rd man/trim_INLA_model_obj.Rd man/unmask_Mdat2In.Rd man/validate_spatial.Rd man/verbose_Param.Rd man/vertex_areas.Rd man/vertices_Param.Rd man/vol2spde.Rd tests/data_notInPackage/resample-forInPackage.R tests/simulate_cifti.R tests/spelling.R tests/test_notInPackage_HCP.R tests/test_notInPackage_HCP_onsets.R tests/test_notInPackage_HCP_scrubbing.R tests/test_notInPackage_HCP_spatial_update.R tests/test_notInPackage_MSC.R tests/test_notInPackage_sim_0simData.R tests/test_notInPackage_sim_1bglm.R tests/test_notInPackage_sim_2bglm2.R tests/testthat.R tests/testthat/test-auto.R vignette_data/vignette_data.R vignettes/BayesfMRI_vignette.Rmd