Man pages for manutamminen/prider
prider provides functions that should make PCR primer design from multiple sequence alignments a little less painful.

add_consensusAdd consensus sequence characters to the data frame from...
complement_seqReturn a complement of a DNA sequence. Throws an error if a...
degapRemove gaps in the sequence data frame from add_consensus
find_conserved_areasFind conserved areas within the consensus sequence data...
find_primersCombine the consensus-calculating and primer finding...
iupac_consA function that returns IUPAC codes for degenerate...
make_consensusConstruct a sequence data frame from ape multiple sequence...
make_seq_tablePrepare a frequency table of each nucleotide position of a...
mark_indelsMark indels with a conservation score of 0. This will cause...
max_valuesExtract the most dominant nucleotide signal from each...
parse_sequence_listParse the primer match list into a human-readable table.
remove_indelsRemove indels from the sequence data frame while preserving...
reset_indexCreate new indices for the sequence data frame after removing...
reverse_seqReverse a character vector.
test_dna_alignmentMock sequence data for examples and unit testing
manutamminen/prider documentation built on May 21, 2017, 5:47 p.m.